G56509


Basic Information

Item Value
gene id G56509
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 10288850 ~ 10289512 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU64356
TACCTTAGTGCAGTGCGGCACAAAGCCGTATATGAGAGTGTGACAGTCACTGAAGAGGGCGTGAAGCTGTGAGGGGGCTTGAACAGGAGGGGGCGCTGTGGGATTAAACTGCTGCCACTTCACTGCCACTGATCTGCAGCCTGGAGACTCCATACGCTGAACCTGAGCGCGCACCTTCTCTGCCCAAGTGTGTTTCATCTTGGTGTCAAAAAATTCATATGTTCCTCCACCTGCTTGAGCCAAAGCTCTGAGCATATGACGATTAGCTGTCAAGCTGAGTCCGCAGGTGAAGAGACGCGTGTGGCAGGAGTTTTCTCGGACCAGCTGTAGGGTCAGAGGCTGATTCTGAACATGTCCATCAGAGAGCAGCAGGATGTTCCTCACACCCCGGCAGGGAGGCAGCAGGCTCAGGCTCCGGAGAGGCCACCACAGCTCAGTGCCGCCACCAGCACCACTACAGGA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU64356 True 462 lncRNA 0.56 3 10288850 10289512

Neighbor

gene id symbol gene type direction distance location
CI01000009_10268535_10269640 NA coding upstream 19066 10268535 ~ 10269784 (+)
CI01000009_10103558_10119209 GDAP2 coding upstream 169630 10103558 ~ 10119220 (+)
CI01000009_09967529_09989449 TBX15 coding upstream 299383 9967384 ~ 9989467 (+)
CI01000009_09952526_09962840 WARS2 coding upstream 324571 9952526 ~ 9964279 (+)
CI01000009_09878612_09881564 POPDC2 coding upstream 406956 9878612 ~ 9881894 (+)
CI01000009_10319216_10329706 PLCD4B coding downstream 29704 10319216 ~ 10329836 (+)
CI01000009_10338738_10339712 BCS1L coding downstream 49226 10338738 ~ 10339774 (+)
CI01000009_10341830_10347798 CYP27A1.2, CYP27A1.4, CYP27A7 coding downstream 52318 10341830 ~ 10348005 (+)
CI01000009_10361969_10374788 MCM3AP coding downstream 72457 10361969 ~ 10375458 (+)
CI01000009_10376105_10382009 LSS coding downstream 86593 10376105 ~ 10382284 (+)
G56507 NA non-coding upstream 4326 10283073 ~ 10284524 (+)
G56392 NA non-coding upstream 29190 10258528 ~ 10259660 (+)
G56349 NA non-coding upstream 153421 10052050 ~ 10135429 (+)
G56456 NA non-coding upstream 230318 10058274 ~ 10058532 (+)
G56439 NA non-coding upstream 268507 10020106 ~ 10020343 (+)
G56540 NA non-coding downstream 947 10290459 ~ 10292559 (+)
G56393 NA non-coding downstream 13970 10303482 ~ 10304485 (+)
G56564 NA non-coding downstream 63417 10352929 ~ 10353684 (+)
G56579 NA non-coding downstream 222901 10512413 ~ 10512640 (+)
G56567 NA non-coding downstream 229304 10518816 ~ 10533725 (+)
CI01000009_09853929_09854476 SAP18 other upstream 432263 9853929 ~ 9856587 (+)
G56100 NA other upstream 1158564 9129300 ~ 9130286 (+)
G53651 NA other upstream 4040458 6245564 ~ 6248392 (+)
CI01000009_05931829_05943829 KCNH3 other upstream 4356049 5931718 ~ 5943899 (+)
G53388 NA other upstream 4749796 5522242 ~ 5540638 (+)
CI01000009_11761868_11765848 ORMDL1.S, ORMDL1 other downstream 1471274 11761606 ~ 11766944 (+)
G57811 NA other downstream 1644430 11933942 ~ 11935251 (+)
CI01000009_12432736_12435509 NA other downstream 2143046 12432538 ~ 12436017 (+)
G57682 NA other downstream 2535957 12825469 ~ 12892339 (+)
G57691 NA other downstream 2616932 12906444 ~ 12918465 (+)

Expression


Co-expression Network