G27729 (LOC103457336,LOC100194557,LOC103359577)


Basic Information

Item Value
gene id G27729
gene name LOC103457336,LOC100194557,LOC103359577
gene type unknown
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 52454431 ~ 52456164 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU37199
aagtataataaaattgtttattattattatttattcatacatttaaagCCTGGATGATTATAACAGGAATAAGAGTCATTGCACATCCTTACCTGGGTCATCTTCTCCCTGTTGGCCTTGGGGTTCAGGGGAGCCTCAGTCAGAAGGGTGGGGTGTTCCTCAGGGGCCACACGCAGCTCATTGTAGAAGGTGTGGTGCCAGATCTTCTCCATGTCATCCCAGTTGGTGATGATACCATGCTCAATGGGGTATTTCAGGGTCAGGATACCTCTCTTGCTCTGAGCTTCATCTCCCACGTAGGAGTCCTTCTGACCCATACCCACCATCACACCCTGGTGGCGGGGACGGCCAACAATGGATGGGAAGACAGCTCTGGGGGCATCATCACCGGCAAAGCCAGCCTTTACCAGGCCGGAGCCATTGTCGCACACAAGAGCGGTGGTCTCGTCATCGTCACACATGGTTCTGGCTTAGATGCAGATGTTCTTCAGAAGCTGCTTCCCAGTGGAGAGTTTGTGGTGGTTGTGACAGTGCAGGCCCGGGTTTTATACCATCCCGGCTGTGTGGCCCCGGCTGGGCATCCCTCACCTTATTTGGTAG

Function

NR:

description
PREDICTED: actin, alpha cardiac-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU37199 True 600 TUCP 0.52 3 52454431 52456164

Neighbor

gene id symbol gene type direction distance location
LOC103030894 NA coding upstream 42351 52403882 ~ 52412080 (+)
ddhd1 NA coding upstream 53613 52382945 ~ 52400818 (+)
psmc6 psmc6,LOC107668141,LOC107549540,LOC107582103 coding upstream 80284 52367883 ~ 52374147 (+)
LOC103029411 NA coding upstream 126629 52321992 ~ 52327802 (+)
tmx3 tmx3 coding upstream 759414 51586207 ~ 51695017 (+)
trnac-gca_8 NA coding downstream 12608 52468772 ~ 52468843 (+)
LOC103032675 kcnk10a,LOC103032675,LOC108413877,LOC107664828,LOC107582110,LOC107740298,LOC107747370,LOC107668129,LOC105017581 coding downstream 118774 52574938 ~ 52609821 (+)
LOC111188745 NA coding downstream 313078 52769242 ~ 52781864 (+)
LOC103033541 LOC108413844,LOC108417958 coding downstream 329495 52785659 ~ 52789369 (+)
LOC111188773 LOC108417958 coding downstream 354889 52811053 ~ 52816494 (+)
G27716 NA non-coding upstream 73426 52379856 ~ 52381005 (+)
LOC111188740 NA non-coding upstream 90259 52362005 ~ 52364172 (+)
G27701 NA non-coding upstream 106175 52342948 ~ 52348256 (+)
G27684 NA non-coding upstream 138936 52315112 ~ 52315495 (+)
G27682 NA non-coding upstream 141197 52313035 ~ 52313234 (+)
G27763 meis1,LOC103032373,LOC100690952,LOC106953003,LOC102195920 non-coding downstream 72564 52528728 ~ 52531000 (+)
G27772 NA non-coding downstream 147782 52603946 ~ 52693356 (+)
G27775 c25h14orf132,LOC108413331,LOC105892943,LOC107549545,LOC107582175 non-coding downstream 211171 52667335 ~ 52672114 (+)
G27834 NA non-coding downstream 448156 52904320 ~ 52904678 (+)
G27849 NA non-coding downstream 573645 53029809 ~ 53030010 (+)
G27683 LOC108412685 other upstream 140165 52314025 ~ 52314266 (+)
dsel dsel,LOC108411752,LOC105896186,LOC106590194 other upstream 363798 52083282 ~ 52090633 (+)
G27489 NA other upstream 1276057 51174488 ~ 51178374 (+)
lyrm2 lyrm2 other upstream 1682269 50769863 ~ 50772162 (+)
nup43 nup43 other upstream 1700470 50744883 ~ 50753961 (+)
LOC111188765 glrx5,LOC106571612 other downstream 303949 52760113 ~ 52768976 (+)
trnah-gug NA other downstream 1166659 53622823 ~ 53622894 (+)
trnae-uuc_2 NA other downstream 1167018 53623182 ~ 53623253 (+)
trnar-acg NA other downstream 1167285 53623449 ~ 53623521 (+)
trnam-cau_5 NA other downstream 1167453 53623617 ~ 53623689 (+)

Expression


Co-expression Network