G27947


Basic Information

Item Value
gene id G27947
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 53639799 ~ 53640057 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU37493
TCCTAGATTTTCAAAGATACAgaacaagaaagagagggaCTGAGGTTCACACACTTGAGTTTCTGTGCTGAAAGATCATTTGTTGGATTTACAACCTGAAGTGCAGTTTCACAGATGTGGTTTCCTTGAACGCTGCTCGATTGACTGTTACAAAGCGAGATTTATTAAAAACCCACCCGTAGTCggcaggattcgaacctgcgcgGGGAGACCCCAATGGATTTCTAgtccatcgccttaaccactcggccacgaCTAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU37493 True 259 lncRNA 0.35 1 53639799 53640057

Neighbor

gene id symbol gene type direction distance location
LOC103035653 flrt2,LOC108444111,LOC107752686,LOC107706955,LOC107664820,LOC107570088,LOC107701229 coding downstream 229730 53333965 ~ 53410069 (-)
glrx5 glrx5,LOC106571612 coding downstream 873955 52760053 ~ 52765844 (-)
LOC107197707 c25h14orf132,LOC108413331,LOC107549545,LOC107582175 coding downstream 922732 52670111 ~ 52717067 (-)
LOC103041285 LOC108413330 coding downstream 998215 52640295 ~ 52641584 (-)
LOC103032373 meis2b,LOC103032373,LOC108413876,LOC107582109,LOC107664830,LOC107668148 coding downstream 1085527 52525768 ~ 52554272 (-)
med23 med23 coding upstream 49310 53689367 ~ 53715908 (-)
tmem200a tmem200a,LOC107697489,LOC107570881,LOC107653146,LOC107560495 coding upstream 523045 54163102 ~ 54190321 (-)
tab2 tab2 coding upstream 827960 54468017 ~ 54524305 (-)
nus1 nus1,LOC107736830 coding upstream 1001958 54642015 ~ 54652464 (-)
LOC103032288 LOC108424430 coding upstream 1015347 54655404 ~ 54659026 (-)
G27922 NA non-coding downstream 76779 53562599 ~ 53563020 (-)
G27920 NA non-coding downstream 78274 53561271 ~ 53561525 (-)
G27919 NA non-coding downstream 97523 53541861 ~ 53542276 (-)
G27918 NA non-coding downstream 104802 53534640 ~ 53534997 (-)
G27906 NA non-coding downstream 110115 53457805 ~ 53529684 (-)
G27956 NA non-coding upstream 19819 53659876 ~ 53660137 (-)
G27958 NA non-coding upstream 21486 53661543 ~ 53661915 (-)
G27960 NA non-coding upstream 22757 53662814 ~ 53663152 (-)
G28074 NA non-coding upstream 153161 53793218 ~ 53838213 (-)
G28082 NA non-coding upstream 190416 53830473 ~ 53833244 (-)
trnal-cag NA other downstream 17441 53622071 ~ 53622358 (-)
G27821 LOC108413844,LOC108411774,LOC108411773,LOC108417426,LOC108417958 other downstream 789893 52786472 ~ 52849906 (-)
LOC103040973 NA other downstream 1317879 52293880 ~ 52321920 (-)
pcmt1 pcmt1 other downstream 2899365 50725063 ~ 50740434 (-)
LOC103034285 NA other downstream 3100127 50522899 ~ 50539672 (-)
akap7 NA other upstream 102823 53742880 ~ 53907412 (-)
LOC103040805 NA other upstream 409738 54049795 ~ 54055697 (-)
LOC111188920 slc35f1,LOC107549682,LOC107743307,LOC107697151,LOC107678858,LOC107727669,LOC106571386 other upstream 916831 54556888 ~ 54623840 (-)
LOC103023935 snx9b,LOC103024560,LOC108424479,LOC108424433,LOC107603096,LOC107549701,LOC108257753,LOC107697150 other upstream 1626034 55266091 ~ 55314179 (-)
mixl1 lin9,LOC107678835,LOC107726751,LOC107697095 other upstream 1792024 55432081 ~ 55444669 (-)

Expression


Co-expression Network