G108016


Basic Information

Item Value
gene id G108016
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 1564115 ~ 1566185 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU145952
tgtttttaaatattttatgaatcagaaaagacagaaaagaccCTTTCTGACACCGGCagtctaaaacagcaacttagGTGATCTCTGAAAGTAATGGCACTGTAACCTGTCTGGATTTGGATTTTGGATTGCGTTAATGTTACTCAATTAATTTGAAAACAATCAGCACATTTCAACTGTGCACATTTAAAGTGCCTTTTGGTTTCACTGTTTAGTAGTTGAGTGTCTAAATCTGTAATCTGTCTTGTTACTCAGAGATATTTACCAGTATGTCATACTATTCCATGAATACACCATAAATAGTCTATTTGTTATTGTATAATATTACTCAGTGACACACTGGGGATCGATCTAATTTTCTCCACATTTCatcttcaaataaattaaagcaGAAAACCTCAAATCTCAAAACCTCATGGGGTTACTGACTGGCTCTGGAGGCTGATTCTATTTCGAGTTCATGTTGCAGTTTACTCTTTTGGGTGTCATATATTGTAAGAAATAGGTGATGAATGGTGTGAGGAAAAAGTGTTGGAAAAGGCTTTGGCCTGCAGCTGCTAGACTGCCGGTGTATAATCCCACTGCCTCTTCTCAAAGAGCTAAACTTGGTCATTACATACAAAAATAGAAGTCAAATCagttattttacaaatattacaaataaagaTAATAGTGTGAATCTACACTCACTTTTAAAAAGGGGTTGTACTGTGTAGTCctttattaaaacaacaatgaaatctgaaatctgaacTCTTCTACGCCTGATTAGAGGATTCTTTGTATTGTTCGAAATCTTTTATAGGCAGTTCtatacaacacaaaaaaagatttCCAAAGACGCTGTTTCAGTACTATATTAAGCTCTTGTGATTACAGTGTATTGTAACACCTCCCCCTGTGCTGAGAAGATATTTGGGGATCACACAGGGTTTTGATCAAAGTCTTTTTGTTCCTTTCTAAAAAAATAGTAGCGCCTGCACAGGAAAGTCCTCAACAGCCCCTAACACCCCGGCACACGCTTTGAAGGAGGGAAGGATGTCAAACGATAGACCAGTTGAGTTACTATAAACCCCAGTGTGAAAATGTGGTTCATTATAAAGAAACCATTTGATTCATAGGTTTTTACAGTGGGGTGAAGAGACCTGAGCTGAGTTTatagttgcagatctaaacaaacaaaatcattTAGGACTGTTTTTGTTGCACAATGCCTTGCTGCATGTATTCCCcaaacattttaatgatatgataagatttaaaaagcatgttttataCCCAGAATCTTCGTAGAACTGGTACAACCGTCAGTCAGACATCAGCAATGTAAAGAAACTTTCAGACTTTAAACATCACCACCACTGTTAACAATTCTGACTGTATACTAAGTCTTTTGGTTTCTGTTTTCTTAGTTTCATGTTTAGCATGAAGACATCACAGCATTTCACATCCAACCCACCCTTAATGACTTTGTTCACatcttatctatttatttatttgtaatgtttaaaGTTGAAGTAAATTTATATTCTGATGTGTTTTTGTACAGCTAATTAAGAGCTAATTTGCCTGTTTACAAAGTTATTCTAGGACCTTAACATCGGCCAATATCAGTCAGACTCTATTTGAACCCTCTTATAATCTGTATCTGCACACCCAGTACTGtaggtactgtaggtgtttttaataaagtggccagtgagtgtataaTGTCAAGAACTCATGATAAGTGTAACACACACTGAAGCGTCTCAACTCCTCCTGAGGTCTGCGAGGAGAAGTCACACaccagtgcagtgcagtgtgaaCTGTCAGCAGCATGCTACTGGTCAGCTAAGTCTCCATAAAAGTCCAGTCAGTTCACTGAGGTCAGGGAATGATACCAGCGAAGGTGTTGATGGGCAGAGGAAGACCCCGATTCATGAACTTGCTCAGCCCTGCATCCACATCTGCCTCTGATGTGAACTTTGACATAACAGACTTCTGAATGTAGTATCCTGGGTCGTTACACGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU145952 True 2013 lncRNA 0.38 3 1564115 1566185

Neighbor

gene id symbol gene type direction distance location
LOC103023227 NA coding upstream 103140 1443756 ~ 1460975 (+)
ttc26 ttc26,LOC107706703,LOC107678174 coding upstream 125252 1430944 ~ 1438863 (+)
rpsa rpsa,LOC107713109,LOC107551921,LOC107581316 coding upstream 135122 1424750 ~ 1428993 (+)
LOC103024797 LOC103024797,LOC107659965,LOC107581317,LOC108413466,LOC107706701 coding upstream 141228 1408707 ~ 1422887 (+)
LOC103031756 myh9a,LOC108442172,LOC108272530,LOC107713107,LOC107659966,LOC107581318 coding upstream 157606 1381825 ~ 1406509 (+)
LOC103035167 ntn1,LOC107733905,LOC102290627,LOC107555375,LOC105012279,LOC108242716 coding downstream 102499 1668684 ~ 1740475 (+)
LOC103041697 LOC108424830 coding downstream 642836 2209021 ~ 2276348 (+)
LOC111193705 NA coding downstream 795607 2361792 ~ 2366065 (+)
trnap-ugg NA coding downstream 800334 2366519 ~ 2366590 (+)
LOC103040472 LOC108424829 coding downstream 839500 2405685 ~ 2415834 (+)
G108010 LOC107104536,LOC106601165,LOC103373405,LOC105013423,LOC105929903 non-coding upstream 61751 1496232 ~ 1502364 (+)
G108007 myh10,LOC108272528 non-coding upstream 75716 1487658 ~ 1488399 (+)
G107987 NA non-coding upstream 258079 1303745 ~ 1306036 (+)
G107886 NA non-coding upstream 317446 1234425 ~ 1246669 (+)
G107877 NA non-coding upstream 433183 1130263 ~ 1130932 (+)
G108019 NA non-coding downstream 15746 1581931 ~ 1582330 (+)
G108024 NA non-coding downstream 49163 1615348 ~ 1616366 (+)
G108031 NA non-coding downstream 61890 1628075 ~ 1633785 (+)
G108093 NA non-coding downstream 176398 1742583 ~ 1743539 (+)
G108145 NA non-coding downstream 807611 2373796 ~ 2382794 (+)
ttc22 ttc22 other upstream 549714 999915 ~ 1014401 (+)
lrrc40 lrrc40,LOC107709203,LOC107590628 other upstream 1039156 512911 ~ 524959 (+)
LOC103047478 phb2b,LOC108438152,LOC108427714,LOC107692360,LOC107591156 other upstream 1366553 167655 ~ 197562 (+)
LOC103043925 sgip1,sgip1a,LOC107659047 other upstream 1439560 58118 ~ 124555 (+)
LOC111193655 NA other downstream 871524 2437709 ~ 2453681 (+)
G108181 NA other downstream 907471 2473656 ~ 2474080 (+)
rhbdl3 rhbdl3,LOC107701837,LOC107754871,LOC107718708 other downstream 942923 2509108 ~ 2558261 (+)
LOC103039651 znf207a,znf207,LOC105903839,LOC107698690,LOC107724436,LOC108444040 other downstream 995129 2561314 ~ 2567951 (+)
c13h17orf67 cunh17orf67,LOC103372327,LOC106524488 other downstream 1314849 2881034 ~ 2884211 (+)

Expression


Co-expression Network