G108778


Basic Information

Item Value
gene id G108778
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 4604694 ~ 4607409 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU146948
GACAgttctatattctgattggctcaatgagagtacattataatataaagctgatggaTTGGCTAGCgcgagaaataccatgtgtggcgtgtgaacttgctgaggtgcgtgtgtcagAGAACACTGAGAGACTTGGGaacactgctgctaaccctggctagcactgctggagcagtattagcattagccgctaaccgaattaagcgctaactcttttgcCGTTCTGAGGCCTATGCTTTGAAGGGGACTGACCAAAAGACTCGAGCAGAACAGCGTTCACAGTCGAGGTCCTCTTTTTCCAGATGAAGTGGGGAGGGAACGGAGGGATCGGGGGTAGAAGTCAGCAGGCTTCAGATACGGCCCAAAAGAATGTCTGGCCTCCTTTTGCACAGATGTGTAATCACAAAGGAATGCCTGGAGCCCACtctgctttttccaccgttagcCCCTGCACTCTCACAACAGTTTCCCACGCCTTCCATGGATCATGGGGCATAGTTTTCATATGCAGGCAAGCTGTGGCCAGTCATCAGTACCTTACGACttcaagaaaacaagaaatcgTTTCCAGTGCTACACTCTTTCCACTCATTTCCAGTCACTCACTGTAGCCTCTGCTGCTATATCAGTATGTTTTACCTGTTCTCAGGATCAAGATCTATGATTGCAGAGCACAGCCTGATAGACCAATTATAAGGAAGCAGAGGTcatgtaaaattaatttttaatgtgATAAAGTAGAAGGTTACATACACTTAATATGTAACTTTTAGTTTTTCCCCATGGTTGAccttaaaatacaattttgctGTATCTTGATTTcataattgttttaatgattGATATGTTACTGTTTCTATTTGAAGTCTATTAAAGTATTCAACCATATAAAAGTATGCTATTTGGAACAAAAGCAGTGCCTTATAGTATCCTGAACTAACA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU146948 True 942 lncRNA 0.43 2 4604694 4607409

Neighbor

gene id symbol gene type direction distance location
LOC103032560 calcrl,LOC107555409,LOC107743566 coding upstream 88247 4462328 ~ 4516447 (+)
LOC103029388 col5a2,LOC107555399 coding upstream 350861 4178153 ~ 4253833 (+)
LOC103030560 LOC108430861 coding upstream 457868 4133543 ~ 4146826 (+)
LOC103030027 LOC103030027 coding upstream 472834 4120948 ~ 4131860 (+)
atg9a atg9a,LOC107741391,LOC107677585 coding upstream 576410 4010720 ~ 4028284 (+)
LOC103034257 LOC108411001 coding downstream 41054 4648463 ~ 4804041 (+)
LOC111193672 NA coding downstream 459866 5067275 ~ 5070703 (+)
LOC103029080 LOC108411784 coding downstream 597697 5205106 ~ 5211379 (+)
LOC103028447 stk24,stk24b,LOC108411787,LOC108273064,LOC107709742,LOC107705591 coding downstream 641097 5248506 ~ 5271660 (+)
LOC103040245 fam117ba,LOC108411669,LOC108272899,LOC107748582,LOC107555413,LOC107705530,LOC107660077,LOC107584760,LOC107688895 coding downstream 954573 5561982 ~ 5576303 (+)
G108743 NA non-coding upstream 101434 4497759 ~ 4503260 (+)
G108654 NA non-coding upstream 510283 4084654 ~ 4094411 (+)
LOC111193713 NA non-coding upstream 727011 3823519 ~ 3877683 (+)
G108599 NA non-coding upstream 747706 3849625 ~ 3856988 (+)
G108585 NA non-coding upstream 804169 3765928 ~ 3800525 (+)
G108784 NA non-coding downstream 8946 4616355 ~ 4616772 (+)
G108786 NA non-coding downstream 22682 4630091 ~ 4713305 (+)
G108788 NA non-coding downstream 34177 4641586 ~ 4688525 (+)
G108789 NA non-coding downstream 44169 4651578 ~ 4651845 (+)
G108794 NA non-coding downstream 87314 4694723 ~ 4696409 (+)
G108773 march7 other upstream 12901 4586327 ~ 4591793 (+)
LOC111193715 NA other upstream 246927 4308092 ~ 4357767 (+)
LOC111193711 NA other upstream 777529 3788802 ~ 3827165 (+)
G108354 p4hb,LOC107701207,LOC107553316 other upstream 1515967 3071525 ~ 3088727 (+)
anapc11 anapc11,LOC107553313 other upstream 1547133 3053906 ~ 3057561 (+)
wdsub1 wdsub1,LOC108411000,LOC105893302 other downstream 197820 4805229 ~ 4827718 (+)
LOC103029387 LOC103029387 other downstream 449129 5056538 ~ 5062119 (+)
G108999 LOC108411783,LOC107584812,LOC107555440,LOC107709735,LOC107705592 other downstream 698641 5306050 ~ 5309757 (+)
G109242 NA other downstream 1557190 6164599 ~ 6166662 (+)
G109248 LOC108433704 other downstream 1645801 6253210 ~ 6255057 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_032660 NA non-coding NC_007117.7 CM002890.2 11815169 ~ 11848486 (-)
grasscarp (Ctenopharyngodon idella) G123230 NA non-coding CI01000024 null 2528288 ~ 2529219 (-)