G108931


Basic Information

Item Value
gene id G108931
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 5120487 ~ 5124677 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU147140
GCAGGTAGCAACCAGATctctttaattatataattgcaTTTCTCAGACGCAGAAGATtgatttactgtacatttctcttttttccccagtAGAATATGAATCTCTTTCAATCGGGATTAGGGTGGAATTACATCCCGTCACAGCACACAATAAATCATCAGTAACTTCTATTGCTCTCTTGTAGGGTTAAACAGACAGTGGAGCTATCACTGAATCTCATTGTGTCCAAACAAACCTGTTAGACAATAAGAGATCCAGTCACGCAGATTATCATACTGCTAAAAATGATATCTTGGCAAGTGAAGTCATCTTACAAtcagttaatattagctaacaggTCTGTCACGAAAACAATCTttttaatgaacaatatattgaCAATTTATTGAAGTTGCAAAaagaattgtgtttatttattatttaaaggttcTGACCAGTTTATgctactgatataatgataatataatagcttaataaagcatatattatacattttcaaaacacaATAATCTTTAATTTCGTAAAAAAATTCAGACActggaattattattttttaaaaattcctaaataaataaaataaagagaattaaATGACTGCTTTTAAAAAGTCAATTTAATGTATGATAAGTTGTGACAGGCTTAATAgctaatatttttcattttaatacttATGAAATTAATTAACTTGCATGTTTCATgacatttttaaagttaatttatttactcaaatttatttaaattgaaataatactaactttagcttgtctttaattattattaaataattaaaattattaaattaaataaaatacattttatttttaaattttcctGCATACTGATAGCATCTCCCCAACTCACATACATAAAGTGTATCATATATAAAATCTCATAGAATAGGGGGATTGTGTATTGGACTCGTTTTACCCATTTGTGTGAAGCAAttgagtgagatagagtgagtgagtgaccaTTGTAGAAAGAGTGTCACATAGCAAGCATCTTAATTGGTCCTTCTTTATGCTCCGTAGACCTCTTTCTTTTAAAGTGTATcatcagttcagtttgtttctGCAGCTATTTGGGGGTTATGTGGCAACCTTCAGAAACAACAGAAACTATTGGAATATTAGAGGATTAGCGGTTATGTGGCAACCCATCGGCTGTCTGAAATCTGGCCCCTCTGTACTGTGCTCAGTAGCTGAACCAATCAGAAGAGAGAATAagggggctccgagtggttcatgtagcttaccATCGgttgccggagccccgagagagcacaattggcttttctctctctgggtgggtagatggtgctctctcttccCACATGACTCCAAAGGGAGAtgtcagcacaaggcgtctgtgagctaatgtattggaactgagtcgctgggctttcctccgagtggctggcttcacatttatcagaggaggcatgttctagtcttcaccctccaattttggggcatcactagtgatagggggagtcttaatgagtgcgTTAGGTTATTgcccgtgtaaattggggagaaatttcGTTGAGCTTTGATGACGTTCCTCTTGTGCTAATGATTCACCTACACGTTCCTTTTACACTCATAATCACACCAATAGCCTCAATGTTCCCTCAGCCCTCTTTTCACAAGATTAAAGGTCTAGTttctttagaaatgttttattccAATTTAAATGGAGCAGCAGTtccataaatactgtatatatacttgTGACTCTATGGGCTAGTGTTGTCACAATACCAAAATTATAActgtctaaatatctaaatagtCATTCTGAAACAATATCACAGCAAAAAACCTAAATCATCAGAAATTATTGGAATATTAAAGGATTGAGGGTTATGTGGCAACCTGCCTCCCTGAAATGAGTTTTTGCAGCATTGGGTTTCTGTTGTAGGATGACTTATAGTCTGCTGCACAACCAGATTTAGAAATGTCAGGAACACATTTTGGAATGATTTAATTTGCCAAGATTTCATATTTGTGATGTAATAAAACCAACAGACGTAGTGAATTTACCATTCCATTCTTAATACattcttaatacatttttaacacaaaGTAGTGATCCTCATAAAAGAAAACATACTCAACACAATTTCGCTCAAGAGAACACAGAGCCAAATAATAGGTTGAAAAGGGTGTGAGTGAGATTCAACATGTCAAGTTCATTTACAGCAACGGCTCTGTAGAAAACAAGGCACATTAAATACTGTTAATCCCTTATAAATCCGCGCTCTGTACGTTACCTCACGctgttttcacatttaaacGTCTAGTAACTCTAAAAACAATCCTGcaaagattttctttttaaaataatgaacaaatTCACTGTGATTTACTGTAATCTTGCAGCAAAAGACAATGGATTAGCGAAACATTCCTTTCATAAAAGATATCCTCTTAGGGTTATGTAAAAGACAGCATTGTACATTgatgttattaaaaacactgtgcatATTGAGGCAGAATTGTCAATACAGTATCAAAATTACATTCTATTCATTCAGCACTGCAGAAAATCACTGTCCAGGACTGAAGCATTACATGTTTAATACAGGACAGGCTAAATTTAAAAGGGGAATTCCACTGATTTTTCAAGATGTCTGCAGAATTAAACCATTACATTTTTTGGAAAAGAAAtctgtttagtgtgtgtgaaagGTTGGTGCAGAATAGTCTATCTTAGAGACATATACAGAGCCAGAACAGAAAACGTTGGGCAATGGAAATGTCCAGTCACTGTCAATCTTGTCAGCTCCAACTGATCATATAGAAGACTTTGTAGTTCTATCATGACAAACTGTAGTCCTGCATCTGTTTCtgtgcatactttattattaatcttctttcaccctgttcttaaaatggtcaggaccccacaggagagaccaccacgtcgcagctattatttgggtggtgggtcattattatcACCACTGCAGTGACTGTACTGGTTTTTTGGTGTATgagatgttagtgtgtgttgtgctggtataaggggatcagacacagcagtgctgctggtgttatTAAACATCTcactgtcactgctggactgagaatagtccaccaaccaatagaatcctgtgggcagcttcttgtgggcagtgtcctgtgaccacagatgatttttttgtgaattatcaTTGTTTAGAAcccccagcagcactgctgtgtctgatgaAGTGAAGAACAGAGCAAGAGgaagataataaaatatgcagagaaacagatgcaggactacagtctgtaattaaatgGTGGGTGGAGCTAGTAAGATGAACAGAGAGCAAATTTTGCCTAAACTTTGTGAACGCTGTGtgggttgttttttgtttttccattttattaatcaaataacTGAATGAACTGAGTGAATGATTGCAGAAATCTTGTAAAAGCTTCTGCAACTCCCCTTTGACAATAAATATCACCTTAGAAAAGACAAAGTATAAAGATAACAGTGACATGGCAGGAGTGTTAAAAATATTGGTGATTGTGTTTAACAGCAGTAACCACACAGTAACCCTGCGTGTGTAAACTTGAGAAGATCTACAGAAAGTGCAAAAGATTGTAGCTCCATGTACAGTATACTGCACATACTTCTCCTCCCATGCTTTCTTCACATGCGTACAAATGGCACAGCAGAAAAAAGTACAATACAGCTGCTTTAGAACACAGTGCAGCAGCAGTGGCCAGAAAACAACACTGCCCAGTGAAAAGCACAAAAACGGCACTGCATGCATCAGCAGTATAACCCAGTGcaagaaaacagagaaactctaaaagaacagaataaaaactgctaaattatattattacataacaCAGATTCCACTATTTAACAACAGTTATTGTGcgtattaaaataaatgcaaagcAGCATACAAACAGGAATGTATTTGAATGGTAATGGAAGGCAGGCGATTGGTTGCCGAGTTTTCCGACAGTAAAGCGGTCACCTTTTTGCAGGCTCGTATTTTAGGAGACACTCTTACACCCCTCCACCACTGCGGTCTACAGACACCGGCCCCCTCAGGTCCAGCCCCTCTTCCACTGTCTTCATCAGGATGGCCAATCGGCTGTCCGAGATCTGGCCCCTCTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU147140 True 4137 lncRNA 0.37 2 5120487 5124677

Neighbor

gene id symbol gene type direction distance location
LOC111193672 NA coding upstream 49784 5067275 ~ 5070703 (+)
LOC103034257 LOC108411001 coding upstream 316446 4648463 ~ 4804041 (+)
LOC103032560 calcrl,LOC107555409,LOC107743566 coding upstream 604040 4462328 ~ 4516447 (+)
LOC103029388 col5a2,LOC107555399 coding upstream 866654 4178153 ~ 4253833 (+)
LOC103030560 LOC108430861 coding upstream 973661 4133543 ~ 4146826 (+)
LOC103029080 LOC108411784 coding downstream 80429 5205106 ~ 5211379 (+)
LOC103028447 stk24,stk24b,LOC108411787,LOC108273064,LOC107709742,LOC107705591 coding downstream 123829 5248506 ~ 5271660 (+)
LOC103040245 fam117ba,LOC108411669,LOC108272899,LOC107748582,LOC107555413,LOC107705530,LOC107660077,LOC107584760,LOC107688895 coding downstream 437305 5561982 ~ 5576303 (+)
LOC103038682 cxcr4,LOC108411668 coding downstream 546835 5671512 ~ 5675221 (+)
mcm6 mcm6,LOC107748580,LOC107688862,LOC107660137 coding downstream 610903 5735580 ~ 5750160 (+)
G108786 NA non-coding upstream 407182 4630091 ~ 4713305 (+)
G108795 NA non-coding upstream 417149 4703015 ~ 4703338 (+)
G108794 NA non-coding upstream 424078 4694723 ~ 4696409 (+)
G108788 NA non-coding upstream 431962 4641586 ~ 4688525 (+)
G108789 NA non-coding upstream 468642 4651578 ~ 4651845 (+)
G108970 NA non-coding downstream 148894 5273571 ~ 5273890 (+)
LOC111193718 NA non-coding downstream 159824 5284501 ~ 5288137 (+)
G109001 NA non-coding downstream 187383 5312060 ~ 5312375 (+)
G109029 NA non-coding downstream 398870 5523547 ~ 5580796 (+)
G109031 NA non-coding downstream 458252 5582929 ~ 5583677 (+)
LOC103029387 LOC103029387 other upstream 58368 5056538 ~ 5062119 (+)
wdsub1 wdsub1,LOC108411000,LOC105893302 other upstream 292769 4805229 ~ 4827718 (+)
G108773 march7 other upstream 528694 4586327 ~ 4591793 (+)
LOC111193715 NA other upstream 762720 4308092 ~ 4357767 (+)
LOC111193711 NA other upstream 1293322 3788802 ~ 3827165 (+)
G108999 LOC108411783,LOC107584812,LOC107555440,LOC107709735,LOC107705592 other downstream 181373 5306050 ~ 5309757 (+)
G109242 NA other downstream 1039922 6164599 ~ 6166662 (+)
G109248 LOC108433704 other downstream 1128533 6253210 ~ 6255057 (+)
rims4 rims4,LOC107666126,LOC107696477,LOC107708122 other downstream 1606467 6731144 ~ 6866913 (+)
blcap blcap,bc10 other downstream 1820088 6944765 ~ 6985492 (+)

Expression


Co-expression Network