LOC103033855 (oxtr,LOC107749620)


Basic Information

Item Value
gene id LOC103033855
gene name oxtr,LOC107749620
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 34825836 ~ 34851152 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU156324
TGAATCTCTTGTTCCAGGTGAGGCTCTTTACCTCGGCAGAAGAGCGAACAGCGCATGAAAATTGCTTTAAAGTGGTGAAGCAGGTCCAGTTTGGAGTGCCATGCCCTTCATCATCTCCATGCTGTTAGCCAGTCTGAACAGCTGCTGTAACCCCTGGATCTACATGTGCTTTGCGGGACACCTGTTCCAAGACCTGAAGCAGAACTTGCTCTGCTGTCCGGCACTTTACCTGAAATCCTCTCAGTGCCGCTGCGACCTGGAGCACGAATCCAGCCGCAAGAGCAACTCCTCCACCTACGTCATCAAGAGCACCAGCAGCCAGAGGAGCATCACCCAGACGTCCACCACATAAGCACTAACGCAACTCCAACTGACCATAATCACTCATGAAAGCGTCACAGAAATAACAGGACAATGGTGTCATGGAGAGCTTTGGAAACTTGGACAGGAGCCTAATAGGACTCAACCCTTGAGCGCTATTGGAATCAGCAGgagctctgtctctgtgatCACTGTGATTACCTCCTGGAGATGTACAGCGTCCTGTTTAGCTTTCCTCTCCTGCACAGCACAAAAAGACCATTCTCATACCGTACATCCTGAGTGCCAGGATTTAAGCAAGGACTGCAATGTTCTAGCAGATGCCACACGACCTTAAATGGAGCCAACATCATGCCAGGCTCCATTAGAATCTGTTTGAGGGTTTTGGCCGCAAGAACAGAGACCATCTTAAAGAGTCTTAGCGTATTTTTTCTGTGGGCAAACTTCTGGACTGGAAATGTTCTTCTTTTGCCATTATTGGAATTTTAAGGCATGAATTCCATTAATTTTCTGCCAAAAGAAAGAAATTCCAGCACTGCATAAGCTCATTTACATCTTATTTAAGGTCACAACCAGtcaaactgtgtgttttttgtggatTTACCTCACACTTAAGGTTTAAGTTGCAAGTCATGAGTAATGAGGAACTCTACTCTCCAGTATAAACTGGAAGACTGCCGGGGTCAATGAGCCTGTGTCCACTGTATTTTTCTTCCAACCTCCAACTTAATGGATGACAACAGAAATCTGCTGTTGCTTTGGCCCATTAAGAGCTTAACATTTCCATCCATTTTCCTGATCATTTTTCACATTCGTTTTCCGCTGTCCAACCGCCAACCTACTCCTTTCAAATTtctccttaaaaaaatctttttaacgtcttaactgagtcaaagttTTGTAGGCACatgctttttttgctgtttttttaaatgtgaaattaagaaaatgtatgttttttacttGTAAATGGAAAATGTGATTCAAGTGaggtaaacaaatttaaatgttgctctgaaaactgaaaaaagaaaaaaactcatttttgttgTTGCACCTTCAAAAGAAATGTCCAAGAACGAACACAAAACATATTTGTTAGATCCAGCTTTGACAGTAAAAAGGAAGAAAGTATTACTGCCTAATGAAAAGTCTCATTAGCTCTTCCCATGTTGATGTTGATGGTAAAAAGGATGCGCTACCAGACGGTTTGAAGACATCATTTCACAGTGTTTGATCATATTCTTTACGGAAGCTTTTTGTCTGATTTAAAAAAGCTACTGAACATTTCCTCTGAAACACAGTCATGTCCATTTACAG
>XM_007253264.3
AGCACAGCTAAACAAATGTAGCTGTCCTTCATCTAAACTTTGCTTTTCATCATTGATTGGCCTTGAACAAAACCAGTTAAAGTGCTTTTCGTCATGTTcagaaaaaaagctttcagCGTGTGAACGATAAGCTGCTCTGCTGGAAACCATTTCGCTGGGAGAGGAAAAATCAAACATTGTGGTTTTTAAGACTGAGATGGAAAATCAAATCCCACTATGTCACTATAATACGTGAAGAGTGAGACATAAccattttcagtttatttgctGTTTCCCATGAAGGAGAACATGAATCGTCTCATGATCAATAGCTGTGGCTCATACGGACATCTAGTGGAAGTCACGGGTAGAGTTGCTGTTGAGGAGGAGATCTGGGGGGGAGAAACTGAAGCACTGACGTTCATTCAGACCTAgctcagaaaaagagagagagagagagagagcaggggaTGTGGGGCACACATACAGAGAAGGAGGGAagacagagcaggagagagagaggagaagagaggttTGAAGCTCCTCTTCAAGGACTTTATGGAGCTTGCTCTGGAGCATAACTGTCTGGAAATGAACCATTAATACTCTCCAGGCTCAGTCTCAGGGTCCGTCGTCACCAGCCAGCAGCGCGCATGAGGAGACCCCGCACGCCTCCTGATCTCCGCGCGCCCTGGCCGCGCTGAAAGTGCTGGGGTCTCGAGCTCTGCGCGCGCGCGCGGGTCTGGCACCATGGAGGAGGACCTGTCCGCGGATCAGCCCTTCTGGGCCGCCTTTAACGAGTCGTGGAAGAACTCGAGCGTCTCCAGCAACGCGAGCGCCGCGTCCAACCAGACCGTGAACCCGCTGAAGCGCAACGAGGAGGTGGCCAAAGTGGAGGTGGCCGTGCTCGCTCTGGTGCTGTTCTTCGCTCTGGCGGGCAACCTGTGCGTGCTGCTCGCGCTGCGCACCACCAAGCACGGGCCCTCGCGCATGTACTACTTCATGAAGCACCTGAGCATCGCGGACCTGGTGGTGGCCGTGTTCCAGGTGCTGCCGCAGCTCATCTGGGACATCACCTTCCGCTTCTACGGGCCGGACCTGCTGTGCAGGCTGGTGAAGTACCTGCAGATCGTGGGCATGTTCGCCTCCACCTACATGCTGGTGCTGATGTCCGTGGACCGCTGCCTGGCCGTGTGCCAGCCGCTGCGCTCGCTGCGCAGACGCACCGACCGCCTGTACGTGCTGTGCTCGTGGCTGCTGAGCCTGATCTTCAGCGTCCCGCAGGTGGGCATCTTCTCGCTGCGCGAGGTGGGCGCGGGCGTCTACGACTGCTGGGGCGACTTCGTGCAGCCGTGGGGCGCCAAGGCGTACATCACGTGGATCAGCCTGACCGTGTACGTGGTGCCCGTGGGCATCCTGAGCGCGTGCTACGGCCTCATCAGCTTCAAGATCTGGCAGAACGTGCGCCTGAAGACGCGGCGCGGGCGCGAGCGCGAGCGGCACGTCAGCAGCGTGGCGCTCATCTCGCGCGCCAAGATCACCACGGTGAAGATGACGTTCGTCATCGTGCTCGCCTACGTCGTGTGCTGGACGCCCTTCTTTGTCGTGCAGATGTGGTCCGCGTGGGACCCAGCGGCCCCCAGAGAGGCCATGCCCTTCATCATCTCCATGCTGTTAGCCAGTCTGAACAGCTGCTGTAACCCCTGGATCTACATGTGCTTTGCGGGACACCTGTTCCAAGACCTGAAGCAGAACTTGCTCTGCTGTCCGGCACTTTACCTGAAATCCTCTCAGTGCCGCTGCGACCTGGAGCACGAATCCAGCCGCAAGAGCAACTCCTCCACCTACGTCATCAAGAGCACCAGCAGCCAGAGGAGCATCACCCAGACGTCCACCACATAAGCACTAACGCAACTCCAACTGACCATAATCACTCATGAAAGCGTCACAGAAATAACAGGACAATGGTGTCATGGAGAGCTTTGGAAACTTGGACAGGAGCCTAATAGGACTCAACCCTTGAGCGCTATTGGAATCAGCAGgagctctgtctctgtgatCACTGTGATTACCTCCTGGAGATGTACAGCGTCCTGTTTAGCTTTCCTCTCCTGCACAGCACAAAAAGACCATTCTCATACCGTACATCCTGAGTGCCAGGATTTAAGCAAGGACTGCAATGTTCTAGCAGATGCCACACGACCTTAAATGGAGCCAACATCATGCCAGGCTCCATTAGAATCTGTTTGAGGGTTTTGGCCGCAAGAACAGAGACCATCTTAAAGAGTCTTAGCGTATTTTTTCTGTGGGCAAACTTCTGGACTGGAAATGTTCTTCTTTTGCCATTATTGGAATTTTAAGGCATGAATTCCATTAATTTTCTGCCAAAAGAAAGAAATTCCAGCACTGCATAAGCTCATTTACATCTTATTTAAGGTCACAACCAGtcaaactgtgtgttttttgtggatTTACCTCACACTTAAGGTTTAAGTTGCAAGTCATGAGTAATGAGGAACTCTACTCTCCAGTATAAACTGGAAGACTGCCGGGGTCAATGAGCCTGTGTCCACTGTATTTTTCTTCCAACCTCCAACTTAATGGATGACAACAGAAATCTGCTGTTGCTTTGGCCCATTAAGAGCTTAACATTTCCATCCATTTTCCTGATCATTTTTCACATTCGTTTTCCGCTGTCCAACCGCCAACCTACTCCTTTCAAATTtctccttaaaaaaatctttttaacgtcttaactgagtcaaagttTTGTAGGCACatgctttttttgctgtttttttaaatgtgaaattaagaaaatgtatgttttttacttGTAAATGGAAAATGTGATTCAAGTGaggtaaacaaatttaaatgttgctctgaaaactgaaaaaagaaaaaaactcatttttgttgTTGCACCTTCAAAAGAAATGTCCAAGAACGAACACAAAACATATTTGTTAGATCCAGCTTTGACAGTAAAAAGGAAGAAAGTATTACTGCCTAATGAAAAGTCTCATTAGCTCTTCCCATGTTGATGTTGATGGTAAAAAGGATGCGCTACCAGACGGTTTGAAGACATCATTTCACAGTGTTTGATCATATTCTTTACGGAAGCTTTTTGTCTGATTTAAAAAAGCTACTGAACATTTCCTCTGAAACACAGTCATGTCCATTTACAGTTAATATAAATCAGAATACTACgtaatttattgaaaataaagtATATGTGCTAATAAA

Function

symbol description
oxtr Enables peptide hormone binding activity. Acts upstream of or within neurohypophysis morphogenesis and positive regulation of angiogenesis. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in several structures, including eye; heart; integument; liver; and pleuroperitoneal region. Orthologous to human OXTR (oxytocin receptor).

NR:

description
isotocin receptor

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0045766 positive regulation of angiogenesis biological_process
GO:0048848 neurohypophysis morphogenesis biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004990 oxytocin receptor activity molecular_function
GO:0005000 vasopressin receptor activity molecular_function

KEGG:

id description
K04229 OXTR; oxytocin receptor

RNA

RNA id representative length rna type GC content exon number start site end site
TU156324 False 1641 lncRNA 0.42 2 34825894 34851152
XM_007253264.3 True 3228 mRNA 0.49 3 34825836 34845482

Neighbor

gene id symbol gene type direction distance location
LOC103035764 gpx1b,gpx1,LOC103035764,LOC108436253,LOC107657914,LOC105017170 coding downstream 283874 34539375 ~ 34541962 (-)
zmynd10 zmynd10 coding downstream 616651 34194665 ~ 34209185 (-)
rassf1 rassf1 coding downstream 632297 34174996 ~ 34193539 (-)
pxmp4 pxmp4 coding downstream 912018 33909445 ~ 33913818 (-)
LOC103043842 NA coding downstream 920390 33895591 ~ 33905446 (-)
rad18 rad18 coding upstream 69530 34920682 ~ 35021276 (-)
srgap3 srgap3 coding upstream 227575 35078727 ~ 35192051 (-)
cish cish,LOC108436260 coding upstream 422517 35273669 ~ 35276962 (-)
LOC103022587 twf2,LOC106582800 coding upstream 439678 35290830 ~ 35310461 (-)
wdr82 wdr82,LOC106565976 coding upstream 461235 35312387 ~ 35317545 (-)
G115709 NA non-coding downstream 52961 34720069 ~ 34772875 (-)
G115690 NA non-coding downstream 280643 34543105 ~ 34545193 (-)
G115687 NA non-coding downstream 287267 34536552 ~ 34538569 (-)
G115686 usp4 non-coding downstream 292622 34531637 ~ 34533214 (-)
G115682 usp4,LOC107713469,LOC107584456,LOC107573741,LOC102796025 non-coding downstream 296991 34525187 ~ 34528845 (-)
G115733 NA non-coding upstream 51294 34902446 ~ 34903225 (-)
G115800 NA non-coding upstream 130273 34981425 ~ 35031292 (-)
G115805 NA non-coding upstream 207390 35058542 ~ 35058917 (-)
G115823 NA non-coding upstream 363976 35215128 ~ 35215670 (-)
G115835 NA non-coding upstream 386459 35237611 ~ 35238189 (-)
G115681 emc3,LOC107584459,LOC107657885,LOC107667035,LOC101173295 other downstream 303418 34520957 ~ 34522418 (-)
nprl2 nprl2,tusc4 other downstream 610410 34210079 ~ 34215426 (-)
LOC103043026 grm7,LOC108271537,LOC108427575,LOC108272196,LOC107708172,LOC107569297 other downstream 651986 33940870 ~ 34173850 (-)
G115468 LOC108427633 other downstream 1062598 33761275 ~ 33763238 (-)
lhfpl4 lhfpl4,lhfpl4a,LOC107656118,LOC107586345,LOC107716887 other downstream 2400440 32279739 ~ 32425396 (-)
G116068 myhz2,LOC108440470,LOC108443907,LOC107385141 other upstream 962469 35813621 ~ 35815322 (-)
LOC103034399 LOC108440553,LOC108271943,LOC107584416,LOC107721179 other upstream 1018651 35869803 ~ 35880291 (-)
LOC103031109 uqcc2,cf125,LOC108440614,LOC107580205,LOC107667355,LOC106565356 other upstream 1103957 35955109 ~ 35958818 (-)
LOC103028059 ghrl other upstream 1205411 36056563 ~ 36062284 (-)
LOC103023810 NA other upstream 2171023 37022175 ~ 37031363 (-)

Expression


Co-expression Network