G117374 (prpf38a)


Basic Information

Item Value
gene id G117374
gene name prpf38a
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 41343493 ~ 41347260 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU158527
agtttatttgagtaaaatcttTTCATAATTTACACGTAGATAAACTGTTTATTACAAGAGGGCTGCTGAAACACTTTAATAATGAACTACAATTGATGGGATGAAAAATATTTCCACTCAAAATGACTTAAAAGAATAAACAGCATCAAAAAACTTGTGTGACTCCAATCAGTTGAGAAAAAGATTcacatcatattttttttatatacacattaccatacaagcattacataaaaaaaatctacaaaaaaatgtagaaaaatcaCTCGTTTCCTCTTCGACTCCTCTTGTGACTCTTCTTTGAGCGGCTTTCTGGAGACTTTGAATGACTGCGATGTCTGTGGCTTCTGTGATGACCTGGAGATTTGGAGCGGTGCCTCCTGTCTCTGGACCGACTGCGGTGTCTGCGGGGACTCTTGCTGCGGTGGCGATCCCGTTCTCGCTCACGTCTGGGTGATGGGCTTCGTCTCTTGGGGGATCTGCTTCGTCTTCTGGGCGATCGGCTTCGTCTGTAGCGAGGAGAGGGAGATCTGCGAGGTCTATCCATATCTCTGTAACTCCGTCTGTGTGGCTCTGGTGTCTGTACTCTTTCCGgCTTCTcctcttcttcgtcttcttcttcactGGACTCCACCTCATCCAGGTCTTCTTCAAGGGCACTGATACGCGGATCTAAAAGCTCAGCTTCCTCCAGGACTTGCCTCTTctgGAGCCTAGGGAGGATGACATCACACACTCGCTCGGCATGAAGCAGCTCGTCTATAAACTCGTCCACATGCATTATCTCAAACTCTCCATTTCggttctgtgttttgatttttcTGTAGTCATTGTACAACGGTTCCAAATACTTATAACAGTCCACTGAGGTGCCAGTCAGGCGCATATACGTTGCTCCAAGCAAGCGGACATATTTAAAATCTTCGTTCTTGATGAATTCTACAATGATGTCCTTCTCAGGCTGAATCTGGAGCATCTTCAGCGTCAGACATAAGAAAGGTGTGGGTTTGATGTTTCCGCCATACACTCCTCCGACAAACTTCAGTTCCATTGCTTTGTCCACAACAAGCTCAGCTGTGAGACCGAAACACTCTTCCTTCCAGTATTTGGACTCGTAGATTCGAGTGCGGATAATTTTCTCCACCAGGTACTGGGGGTTAGTTCCGTGTATACTGTTCGCATCTTTCACTGTTCTGTTCGCCATTTCCACCAGAGAACTGAT

Function

symbol description
prpf38a Predicted to be involved in mRNA splicing, via spliceosome. Predicted to act upstream of or within RNA splicing and mRNA processing. Predicted to be located in nucleus. Predicted to be part of U2-type precatalytic spliceosome. Orthologous to human PRPF38A (pre-mRNA processing factor 38A).

NR:

description
pre-mRNA-splicing factor 38A

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU158527 True 1222 lncRNA 0.45 10 41343493 41347260

Neighbor

gene id symbol gene type direction distance location
orc1 orc1,LOC107725193,LOC105913168,LOC104957406 coding downstream 7964 41324722 ~ 41335529 (-)
c13h1orf210 NA coding downstream 82914 41251017 ~ 41260579 (-)
LOC103032504 ap1m3,LOC108441657,LOC107724146,LOC107684323,LOC108271949,LOC107692442,LOC106528254 coding downstream 93882 41224841 ~ 41249611 (-)
LOC103034848 NA coding downstream 565836 40755348 ~ 40777657 (-)
uhmk1 uhmk1,LOC107692420 coding downstream 706804 40619482 ~ 40636689 (-)
tspan1 NA coding upstream 23776 41371036 ~ 41385641 (-)
LOC111193790 NA coding upstream 234573 41581833 ~ 41582017 (-)
mast2 mast2 coding upstream 533708 41880968 ~ 42081872 (-)
tmem69 tmem69,LOC107579605 coding upstream 735957 42083217 ~ 42085827 (-)
nasp nasp,LOC107551040,LOC107594614 coding upstream 784317 42131577 ~ 42137885 (-)
G117357 NA non-coding downstream 36032 41304537 ~ 41307461 (-)
G117305 NA non-coding downstream 222445 41120752 ~ 41121048 (-)
G117300 NA non-coding downstream 251499 41091474 ~ 41091994 (-)
G117278 NA non-coding downstream 541067 40799599 ~ 40802426 (-)
G117277 slc35d1,slc35d1a,LOC108272060,LOC108441641,LOC107758361,LOC107551012,LOC107724140 non-coding downstream 545674 40795912 ~ 40797819 (-)
G117381 NA non-coding upstream 2237 41349497 ~ 41350906 (-)
G117383 pomgnt1 non-coding upstream 6249 41353509 ~ 41359883 (-)
G117387 NA non-coding upstream 71466 41418726 ~ 41418946 (-)
LOC111193695 NA non-coding upstream 114670 41461930 ~ 41486224 (-)
G117496 NA non-coding upstream 453517 41800777 ~ 41801912 (-)
LOC103041916 LOC107758363,LOC107684070,LOC107692412 other downstream 325679 40816133 ~ 41017814 (-)
LOC103034527 NA other downstream 573811 40731296 ~ 40769682 (-)
LOC103040080 LOC108440156 other downstream 979533 40360319 ~ 40363960 (-)
LOC103028549 NA other downstream 2052465 39284217 ~ 39291028 (-)
LOC103032356 LOC108441420,LOC108272184,LOC107582737,LOC107726519 other downstream 2379799 38953162 ~ 38963694 (-)

Expression


Co-expression Network