LOC103026824 (LOC103026824)


Basic Information

Item Value
gene id LOC103026824
gene name LOC103026824
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 3724537 ~ 3739238 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_015606577.2
AAGGTCACAAAAACCCAGCAGCCTCAAACTAATCCAACAGATCTAAACAGAAGAGAAAACATCAAATAGCTTCCAGAGATCTGCGCCAAGACGGAGGACAGATTTcatttcagGTGAATACATCTCCACTGAGGATGTCCACTGTTGTTGTGCCGGGCAGTGACAGAAGTAATGCCTTCATGGTGGTCACCCATGTGTTCCCATCAGCTGCAACAGGGCAAAATGGAGCTGGACCTCAGCCAACTGCTACTGCACTTCCTGTCTCTGCGGTtcctaatactgctccagagTATACTGGAGATACTGGAGTAATACTGAACAGAGAAACAGCTGCTCCAGAACAATTTGTGAAATTTCTGAAAGTGCACCCAAAAGCAATGGGGACAGTGCAGATAATGATcgggatcatccatcttctgtTCGCAATCGTTTTATCGGTCTCCGCCTCACGAGCAATTGATTCTGGTGTTGTTTTCTGGGGTCCTGTGATTTACTTCCTCTCCGGCTCTTATACTATTATAGCAGAAAACCGCCTCAACTCCAGACTGATGGAAATCTCCCTGAAATTAAACGGGATCAGCGCTGTGACTGGAGGAGTAGCCTTTGCTATGCTGATGCATGTAACAGTACTTATAGGAAGAGGCGAGTACGGCTATGACAAAAGTCTTTTTACGAGTCAGACTGCTGGGATAACTGGAGTGCTCGCGATATTGTCTTTGCTTCAGGCCATCATCAACATCTGCATCTTAAGTTTTGGCTGTAAAACCACCTGCTGCAGTAAACCTCCAGTGCCAGTAATAGCTAATGCCCCGACCCATGCAACACGTTCGATGGGCAACGTGTACCAAACTACCAATGGTCAACAGAATTTATTTTACGTGAATCCCAGTGTGAACCTGATCAACCCACCCTACAGCCCACCTTCAGACAGACCTCCAGCCTACAGCTAGAGCACACCAGATGATTTCAAATAACAGAAGAACGGAAGAGACCTGGAGAGGGTCTGGAACACACAACTTCTGTCTCACTGTAATCTTTGcaaaattgtaaatgtaaacaaattctcacattttaattattttaaatatatagta

Function

NR:

description
membrane-spanning 4-domains subfamily A member 4D-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_015606577.2 True 1094 mRNA 0.45 8 3724537 3739238

Neighbor

gene id symbol gene type direction distance location
LOC103032370 NA coding upstream 2429 3711652 ~ 3722108 (+)
LOC111193710 NA coding upstream 13003 3693847 ~ 3711534 (+)
LOC103027108 NA coding upstream 33135 3677219 ~ 3691402 (+)
LOC103027401 NA coding upstream 49038 3665674 ~ 3675499 (+)
nptx1 nptx1,LOC107750979,LOC107701212,LOC107553322 coding upstream 285216 3429184 ~ 3439321 (+)
LOC103032048 NA coding downstream 5025 3744263 ~ 3755709 (+)
LOC103026540 NA coding downstream 34964 3774202 ~ 3788501 (+)
atg9a atg9a,LOC107741391,LOC107677585 coding downstream 271482 4010720 ~ 4028284 (+)
LOC103030027 LOC103030027 coding downstream 381710 4120948 ~ 4131860 (+)
LOC103030560 LOC108430861 coding downstream 394305 4133543 ~ 4146826 (+)
G108546 NA non-coding upstream 14650 3704889 ~ 3709887 (+)
G108535 NA non-coding upstream 59802 3664496 ~ 3664735 (+)
G108529 NA non-coding upstream 66633 3650511 ~ 3657904 (+)
G108475 NA non-coding upstream 255418 3468436 ~ 3469119 (+)
G108473 NA non-coding upstream 274725 3449597 ~ 3449812 (+)
G108584 NA non-coding downstream 26039 3765277 ~ 3765641 (+)
G108585 NA non-coding downstream 26690 3765928 ~ 3800525 (+)
G108587 NA non-coding downstream 30179 3769417 ~ 3772791 (+)
LOC111193713 NA non-coding downstream 84281 3823519 ~ 3877683 (+)
G108599 NA non-coding downstream 110387 3849625 ~ 3856988 (+)
G108354 p4hb,LOC107701207,LOC107553316 other upstream 635810 3071525 ~ 3088727 (+)
anapc11 anapc11,LOC107553313 other upstream 666976 3053906 ~ 3057561 (+)
c13h17orf67 cunh17orf67,LOC103372327,LOC106524488 other upstream 840326 2881034 ~ 2884211 (+)
LOC103039651 znf207a,znf207,LOC105903839,LOC107698690,LOC107724436,LOC108444040 other upstream 1156586 2561314 ~ 2567951 (+)
rhbdl3 rhbdl3,LOC107701837,LOC107754871,LOC107718708 other upstream 1166276 2509108 ~ 2558261 (+)
LOC111193711 NA other downstream 49564 3788802 ~ 3827165 (+)
LOC111193715 NA other downstream 568854 4308092 ~ 4357767 (+)
G108773 march7 other downstream 847089 4586327 ~ 4591793 (+)
wdsub1 wdsub1,LOC108411000,LOC105893302 other downstream 1065991 4805229 ~ 4827718 (+)
LOC103029387 LOC103029387 other downstream 1317300 5056538 ~ 5062119 (+)

Expression


Co-expression Network