G123791 (galnt10,LOC103022003,LOC100711410,LOC106603494)


Basic Information

Item Value
gene id G123791
gene name galnt10,LOC103022003,LOC100711410,LOC106603494
gene type unknown
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035910.1
NCBI id CM008313.1
chromosome length 38842236
location 22289324 ~ 22299730 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU167072
TTCTTAACAATTTAAGCTAACTTTATAAATAAGGTTAGCTAGCATTACCTAAAGTGTTAGCTAGTACATAGACTAATTACTTTAGCTAACATTTCCCaatgatattagctagcaaaGCCACCTGTCATAATTAAacaaatccagctcaagacctGCTGGCCATCCAGGGAAAACATACCTTATGCTGATCAAGAGCTAGTTAATGAGCTAGCCTCCCAGCAtaaggtgattttttttgggAGGGCAATAAAAAAGTGCAATAAATCCAATTATATTAATAAGTATGTCTAGCACAGTAGCTAGTTGTTCACACTTGTTAGATAGAACATCTTGAATTCTGTGACAGCATAAGCAATTTTAATCTGTAGCCACTGGGTTACGCTGATGTCACATAACTCAGAATCTCACACCATCCCAGAACCTTTTGACAGtgatatgcttaaaaaaagatatagcaGTTCTCTGCGCTGAATACCATACTCATGATAAAAAGTTTCAGATCATCATTGTGAAGTGTTTTTCTGTAGTTTCCTGAAACTCAGAGGTTCATTAGTCAGGAACCGGGAGCTGCACAGCGTCTCCAGcatatttcttttctttctcttttctccaggcctctaaaataaaaaaaacatgtcctaAAGTCTGGCTGCTTAGTGCTGGGCTCAGGAGTCCTGGTGCCGGTTGAACTGGTCCAGAACCGTGGAGTTTGTTCTCTCGAAGACCCACTGCTGGGTGGCTATGCTGGCATCACAGGAGTTCATGAAGACCCTCTTCTCGTTGGGGTTGTGGTCGATACAGCTGTTACTGATGGGGTGGTACAGAGTCTTATCCTTCCTGTAGCGCCACAGCTGGTTGCCCTTCATGCCGTGGCAGTCGTACAGCGTTACAGGGCTGTTGTGTGAGATGGCATCAAAACACACTTTCTTGGTGTGGAGTGGGTCACCCACCCTAATGTCCTCCCTCCACCCAAATGTAAACacCTGTCCGTGGCTCCAGGCAGTTTCTCCCCGTCCTTTTACACACACCTCCATTCGCAGCGGAGTCCCGGAGGAGAAGTGTTTACTCTCCATACACAAACCACTGCCCACGTTCCGCAGCTCTCCCCAGGCTGCAGCTGGAGGCTCCACCGGTGGGTAATGTTTGGGCAGGTCCCAGGCCACGTCCGTCATAAACCACTTAAAGTTCTTACAGTTCAGCCTGGCCCTCAGCTCCTTCTGCGTAGTGACATCCCCGGCGGACAGGTGGCGATATTCCGGCCGCCGCTGGTAAATATACTCTGcatattcatccatccacaccTCCGCTACCCGCTTCAGattCCTGGCGAGGCTGACTCCTCCCGGCACTTTGTAGGGGACATACTTCCTGTAAATATGGCCGACCCGAGAGCAGGGGATATCCTCCATTCGCCCACCGCACATCCACACcTTAAAGGATATCTCATACTGCTCTCCTCCCCAGATCTCCAGTCCCGTGTCATATCCTCCCAGCTCCCAGAACCACTTC

Function

symbol description
galnt10 Predicted to be active in Golgi apparatus. Orthologous to human GALNT10 (polypeptide N-acetylgalactosaminyltransferase 10).

NR:

description
polypeptide N-acetylgalactosaminyltransferase 10

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU167072 True 1509 TUCP 0.48 6 22289324 22299730

Neighbor

gene id symbol gene type direction distance location
LOC103021356 LOC108440621 coding downstream 54458 22223495 ~ 22234866 (-)
LOC103046614 LOC103046614,LOC108440612 coding downstream 68919 22203481 ~ 22220405 (-)
LOC103047121 NA coding downstream 89488 22168134 ~ 22199836 (-)
ndufa2 ndufa2,ndua2,LOC106563745 coding downstream 133346 22152166 ~ 22155978 (-)
LOC103046006 LOC103046006,LOC108440622,LOC107695100,LOC107715823,LOC107569772,LOC563783 coding downstream 139246 22143741 ~ 22150078 (-)
LOC103022606 LOC103022606 coding upstream 76988 22376718 ~ 22391089 (-)
faxdc2 faxdc2,LOC107713607 coding upstream 181050 22480780 ~ 22503714 (-)
LOC103039624 NA coding upstream 455078 22754808 ~ 22771023 (-)
LOC111193846 NA coding upstream 480605 22780335 ~ 22784417 (-)
LOC103039932 NA coding upstream 519062 22818792 ~ 22841235 (-)
G123751 NA non-coding downstream 215717 22073362 ~ 22073607 (-)
G123740 NA non-coding downstream 313156 21975950 ~ 21976168 (-)
G123738 NA non-coding downstream 317388 21971040 ~ 21971936 (-)
G123735 NA non-coding downstream 355399 21924362 ~ 21933925 (-)
G123734 NA non-coding downstream 358149 21923224 ~ 21931175 (-)
G123854 NA non-coding upstream 157097 22456827 ~ 22458511 (-)
LOC111193829 NA non-coding upstream 293455 22593185 ~ 22596134 (-)
G123918 NA non-coding upstream 425750 22725480 ~ 22726293 (-)
LOC111193916 NA non-coding upstream 484688 22784418 ~ 22790055 (-)
G123990 NA non-coding upstream 611254 22910984 ~ 22989866 (-)
G123800 NA other downstream 38285 22250692 ~ 22251039 (-)
G123736 NA other downstream 352571 21927650 ~ 21936753 (-)
c14h5orf24 NA other downstream 502516 21746061 ~ 21786808 (-)
cdc23 cdc23,LOC107692994,LOC106603039,LOC100380698 other downstream 534107 21740564 ~ 21755217 (-)
oaz1b oaz1b,LOC108410751,LOC103361660,LOC108279393 other downstream 1547990 20732683 ~ 20741334 (-)
LOC111193915 NA other upstream 15748 22315478 ~ 22325459 (-)
LOC103023863 hand1,LOC103023863 other upstream 55668 22355398 ~ 22360359 (-)
G123856 NA other upstream 170490 22470220 ~ 22472326 (-)
G123979 NA other upstream 478986 22778716 ~ 22789825 (-)
LOC103038806 gabrb2l,LOC103038806,LOC108413784,LOC107661674,LOC107692986,LOC106567507,LOC105011225 other upstream 914943 23214673 ~ 23349149 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00015903 LOC106610173 coding CM030132.1 CM030132.1 28618576 ~ 28632799 (-)