G126504


Basic Information

Item Value
gene id G126504
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035910.1
NCBI id CM008313.1
chromosome length 38842236
location 31349879 ~ 31352148 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU170848
TTTGGTACGCTCATTGACCTCCTCATAAAGAACAAGGatcaatggcaggcaattaatttaatggagaAGCAACACTAAacaaaagtgaaaccatgacacggtcataacacagatgattgaaaattcatgaaacttggcaaaaacacaagagacatcataagacacgtttttagtattggtaagactgactccgcccaacaggaagtctgccattttgaaaaaagtgtgttttacacacattttttgcatactttgtcgaactcctcctagggaatttgtcgaatactcttgatatttgtctgTAATAAACTGCTGACATACTTCATtgtaaattgcgaaggaatagtcgatatcttaaacgaggacgaaatggcggacagttgaattgcttgagatgccccgttaaaacaggaagtgaatacattctggtgttagtaggtgtttgaggaggttaaaaaggttgaaaactctcgaaaatttacaggcctgcttgatttaagcagtagtttgatctgaaattaaaatttcatatatacgtatttcattggctctatagcgccacctaggtttcaatgcatatttgacattacgggaatgctcaaaacctcttgaaaattgacagattgcataagacctaaaaacactttacaaatattttgacaattttttcatgtatagctagcggactctacagcgccccctaattggttcgtttaataaattaattgtggatgtgtcaaaatttgtctaatcttctcaaattttggtaggatcgtagatagtatgaccctgcacatatttgcaattggcttgtattagctccgcccaacaggaagtcggccatattggaatttgtaatatttttacacatttttcacgaaCTCATTCAAACTgctcctagagtctttgtcagattacctcttatttcgctgtaaatgaacaacagacatatttgatgataactgccaaaggattagttgatcgGTAAAACGGTGACCCAATGGCGAACAATTGAttcactagagacgcaacactaaaccaaagtgaaaccatgacacggtcagaaaacagattattgaaaattcatgaaacttggcagaaacacaaaagacatcattacacacattttcagcattggtaggactgactccgcccaacaggaagtcggccattttgaaatatctgcattttacacacattttttgtgtacattgtcaaactactcctagcaaatttgttgaattctcttggtatttggtaaaaataaacattgaacatatctgatgataaattgtgaaggaatagtcgatatctcaaacgaggacgaaatggcagaTGGTTGAATTTGTGAGATGCCACATCAAAACAGGAGGTCAAAACCTAGGTAATGCCAGGTGTTTTGAGGAGGTTATAACGaagaaaaactcacaaaatttgaCTGGCCTGCTTATCTAAGGCTGTTGTTTgatgtagaattagaatttcaaatacatgtattttaacagcgctatagcgccacctgtattttaaatggatatttcacatgtttaacaggatagaaaactcttgaaaattggcacactcaataagaccttaaaattacttttaccggTTTCTCTgtttggcccggtacgattt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU170848 True 1638 lncRNA 0.37 2 31349879 31352148

Neighbor

gene id symbol gene type direction distance location
LOC103025378 LOC108436808 coding downstream 50885 31283548 ~ 31298994 (-)
arrdc1 arrdc1,LOC106565553 coding downstream 77213 31179845 ~ 31272666 (-)
ehmt1 LOC108437578 coding downstream 184986 31096273 ~ 31164893 (-)
LOC103037904 LOC108437520 coding downstream 266926 30774541 ~ 31082953 (-)
LOC103029404 LOC108436539 coding downstream 580378 30552354 ~ 30769501 (-)
phpt1 phpt1 coding upstream 13483 31365631 ~ 31370026 (-)
noc4l noc4l coding upstream 21130 31373278 ~ 31384862 (-)
pus1 pus1 coding upstream 34306 31386454 ~ 31394928 (-)
ulk1 ulk1 coding upstream 50727 31402875 ~ 31455616 (-)
mmp17 mmp17,mmp17a,LOC107661370,LOC107692290,LOC107736933,LOC106563158 coding upstream 136354 31488502 ~ 31626873 (-)
G126497 NA non-coding downstream 30448 31281873 ~ 31319431 (-)
G126483 NA non-coding downstream 123022 31224642 ~ 31226857 (-)
G126474 NA non-coding downstream 139798 31173920 ~ 31210081 (-)
G126481 NA non-coding downstream 142109 31207014 ~ 31207770 (-)
G126478 NA non-coding downstream 199076 31147116 ~ 31150803 (-)
G126506 NA non-coding upstream 8495 31360643 ~ 31362759 (-)
G126507 NA non-coding upstream 8933 31361081 ~ 31361923 (-)
G126515 NA non-coding upstream 93952 31446100 ~ 31446646 (-)
G126514 NA non-coding upstream 133706 31485854 ~ 31547822 (-)
G126531 NA non-coding upstream 281567 31633715 ~ 31633987 (-)
G126502 NA other downstream 36179 31307550 ~ 31313700 (-)
LOC103024141 man1b1a,LOC103024141,LOC108437506,LOC107661470,LOC107739703,LOC107595674,LOC107692283 other downstream 802489 30507583 ~ 30547390 (-)
G126126 NA other downstream 1376959 29926802 ~ 29972920 (-)
LOC111193936 NA other downstream 2614797 28726748 ~ 28735082 (-)
LOC111193957 LOC107591795,LOC107679390,LOC107711978,LOC107550511,LOC107707678 other downstream 3648180 27682326 ~ 27701699 (-)
G126680 NA other upstream 1292670 32644818 ~ 32645341 (-)
LOC103046968 LOC108436587 other upstream 2119339 33471487 ~ 33489590 (-)
LOC103023154 LOC107701925 other upstream 3006622 34358770 ~ 34455459 (-)
cast NA other upstream 4223815 35575963 ~ 35651599 (-)
G127514 dtwd2 other upstream 4614202 35966350 ~ 35972205 (-)

Expression


Co-expression Network