G126742


Basic Information

Item Value
gene id G126742
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035910.1
NCBI id CM008313.1
chromosome length 38842236
location 33301435 ~ 33316155 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU171148
ctagcaacaccttagcaaccacctagcaacaccttagcaaccaccccggataccatagcaacaccttagcaaccgcctagcaacaccttagcaaccacctagcaaccacttagcaacaccttagcaaccaccccggataccatagccacaccttagcaaccacttagcaacaccttagcaacaccatagcagataccagccagcactgcaatcacactcgcagtttctgtaggaactgcaatctagtttttattattattattttggttctatttttgtttaattcacGATCCACTGAGTATCTGTTCGTCATTTCAAATGaagccatttttaaatatctattttttttacatgttttatattgtggGACACAATGGAACAATGCTATTGTCAGAGTCAGGGTCTACAACCATTCTCTTCGCGAGAATGTAGAACAACGACGCTCACGACTGATGTTGCATTTCTGCTGTTCGATCCAAAACTCGTCTGCTGTTTTCTGATCATTCTGCTGTTCCACAGGTTTCGCTGATCTGAGACCTGCTTTAGGCTgttctcgctcgctctctctctctctttttccccacacacacacacacacacacacatatatatatatatatatatatatatataactccaCAGTTCCCACAGAGAAAAAAACGAATGCACTAATCCATCAATCATCTCAGCTGCTCAGACTGCAGAGCCATTCCTCATCAGACTTATTACAATTATTTCCAAACAACGGTCTGAAGTACAAGGGAGTAGCAATGGGAGGCCACAAAGGTGTAAacgctttttaaaaaatggggaaaggggggaaaaaaaaaaaaaacggaacaatatttcagacattttgaGCACAGTCGAGGGTGCTGGGTGTCATGTGTGGATTATTGCCAAGTCTATCACAATGAGAGAGAGCTATTTAGCTGCTCCTGCCCTGTACCTCTGAACTGCGCATTTCTCTGCTCCCTGGACTCTCGTTTTGTAATTTTACTGAATGATGCGTCTCAGCTTAGCCCGATAATAAAGCACA
>TU171149
acctagcaaccacctagcaacaccttagcaaccaccccggataccatagcaacaccttagcaaccaccccggataccatagcaacaccttagcaaccacctagcaacaccttagcaaccaccccggataccatagcaacaccttagcaaccgcctagcaacaccttagcaaccaccccagataccatagcaacaccttagcaaccacttagcaacaccttagcaacaccatagcagataccagccagcactgcaatcacactcgcagtttctgtaggaactgcaatctagtttttattattattattttggttctatttttgtttaattcacGATCCACTGAGTATCTGTTCGTCATTTCAAATGaagccatttttaaatatctattttttttacatgttttatattgtggGACACAATGGAACAATGCTATTGTCAGAGTCAGGGTCTACAACCATTCTCTTCGCGAGAATGTAGAACAACGACGCTCACGACTGATGTTGCATTTCTGCTGTTCGATCCAAAACTCGTCTGCTGTTTTCTGATCATTCTGCTGTTCCACAGGTTTCGCTGATCTGAGACCTGCTTTAGGCTgttctcgctcgctctctctctctctttttccccacacacacacacacacacacacatatatatatatatatatatatatatataactccaCAGTTCCCACAGAGAAAAAAACGAATGCACTAATCCATCAATCATCTCAGCTGCTCAGACTGCAGAGCCATTCCTCATCAGACTTATTACAATTATTTCCAAACAACGGTCTGAAGTACAAGGGAGTAGCAATGGGAGGCCACAAAGGTGTAAacgctttttaaaaaatggggaaaggggggaaaaaaaaaaaaaacggaacaatatttcagacattttgaGCACAGTCGAGGGTGCTGGGTGTCATGTGTGGATTATTGCCAAGTCTATCACAATGAGAGAGAGCTATTTAGCTGCTCCTGCCCTGTACCTCTGAACTGCGCATTTCTCTGCTCCCTGGACTCTCGTTTTGTAATTTTACTGAATGATGCGTCTCAGCTTAGCCCGATAATAAAGCACA
>TU171152
accccggataccatagcaacaccttagcaaccacctagcaacaccttagcaaccacctagcaaccacctagcaacaccttagcaaccaccccggataccatagcaacaccttagcaaccacctagcaaccactagcaacaccttagcaaccacctagcaacaccttagcaaccaccccggataccatagcaacaccttagcaaccgcctagcaacaccttagcaaccacctagcaaccacttagcaacaccttagcaaccaccccggataccatagcaacaccttagcaaccgcctagcaacaccctagcaaccacctagcaaccacctagcaacaccttagcaaccaccccggataccatagcaacaccttagcaaccgcctagcaacaccctagcaaccacctagcaaacacctagcaacaccttagcaaccaccccggataccatagcaacaccttagcaacca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU171148 False 1039 lncRNA 0.42 4 33305509 33316155
TU171149 True 1083 lncRNA 0.43 4 33301435 33316155
TU171152 False 467 lncRNA 0.52 5 33311493 33314938

Neighbor

gene id symbol gene type direction distance location
celf4 celf4,LOC107584536 coding upstream 5681 33156044 ~ 33295754 (+)
LOC103039386 LOC103039386,LOC108437682,LOC108279294,LOC107661672,LOC107675632,LOC107584535,LOC107736863,LOC107739687 coding upstream 862035 32428412 ~ 32439400 (+)
LOC103024115 LOC108437677,LOC108278636,LOC107662633 coding upstream 884088 32398915 ~ 32417347 (+)
fam219a fam219a,fam219aa,LOC103039079,LOC108278493,LOC107584534,LOC105902504,LOC107661667 coding upstream 914781 32349993 ~ 32386654 (+)
LOC103041132 NA coding upstream 1254532 32027325 ~ 32046903 (+)
tpgs2 tpgs2 coding downstream 38992 33355147 ~ 33367563 (+)
LOC103034246 LOC108278657,LOC108437744,LOC106565181 coding downstream 70092 33386247 ~ 33398447 (+)
nop56 nop56,LOC107661748 coding downstream 85183 33401338 ~ 33410433 (+)
LOC103034578 LOC108436926,LOC107749412,LOC107558139 coding downstream 147127 33463282 ~ 33470308 (+)
nedd4l nedd4l,LOC108438193 coding downstream 268166 33584321 ~ 33718588 (+)
G126725 NA non-coding upstream 4884 33258435 ~ 33296551 (+)
G126724 NA non-coding upstream 181047 33120181 ~ 33120388 (+)
G126718 NA non-coding upstream 276725 33024499 ~ 33024710 (+)
G126713 NA non-coding upstream 351741 32949344 ~ 32949694 (+)
G126706 NA non-coding upstream 443137 32858098 ~ 32858298 (+)
G126770 NA non-coding downstream 42492 33358647 ~ 33434399 (+)
G126781 ubap2 non-coding downstream 98407 33414562 ~ 33417693 (+)
G126777 NA non-coding downstream 109118 33425273 ~ 33450327 (+)
G126784 ubap2 non-coding downstream 110612 33426767 ~ 33446119 (+)
G126798 NA non-coding downstream 215956 33532111 ~ 33535244 (+)
G126708 NA other upstream 437979 32862881 ~ 32863456 (+)
G126702 NA other upstream 467969 32832962 ~ 32833466 (+)
G126632 NA other upstream 898604 32402190 ~ 32402831 (+)
G126613 LOC108415780 other upstream 1007691 32293364 ~ 32293744 (+)
G126040 LOC108436799,LOC104955091,LOC103374273,LOC100049520,LOC107397331,LOC101074260 other upstream 3441218 29856038 ~ 29860217 (+)
dnajc21 dnajc21 other downstream 96383 33412538 ~ 33508922 (+)
trnam-cau_22 NA other downstream 171895 33488050 ~ 33488121 (+)
G126903 lman1,LOC107662211,LOC107739740 other downstream 549349 33865504 ~ 33875369 (+)
LOC103022855 hcn1,LOC108438107,LOC100334297,LOC107085810,LOC107749006,LOC107662227,LOC107701955,LOC107719071 other downstream 773935 34090090 ~ 34286886 (+)
LOC103040215 esm1 other downstream 1141826 34457981 ~ 34464996 (+)

Expression


Co-expression Network