G126903 (lman1,LOC107662211,LOC107739740)


Basic Information

Item Value
gene id G126903
gene name lman1,LOC107662211,LOC107739740
gene type unknown
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035910.1
NCBI id CM008313.1
chromosome length 38842236
location 33865504 ~ 33875369 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU171383
cccgcgggccgtagtttggacacccctgctttaagtAGTTGTAAAAGGCTTTAGCCAACCCTGACCTGCCAGTCCTCCTGTAGCAGCAGAGATGCCAAAGTATCCAGTGGGTGGAATGATCATGTTTTCCACTCTGGTACAGAACTCATAATCCTCCTTCTCGGGGGTGAAACCATTATTGATCAGAACCGTTAATGTTTTTCTGTAGTATGTGATTTTGGCACGGACGGGATAAGGCTTATTCCGGAAGTCTCTAAGGCATGTACCCAGAGCCTGCGTTGATCCATCaTTCTGATGATCATAAACAAGTTTTCCATTGTTCCCCACCACAATGACCGCTGGGTTATTTTTCTTTCCATCATTGTCAAAGGAGTCAAAGAATACTCCCACACCATTCCACTGGTCAGCAGCACCATATACTGGACCTTCCAGGCCCTGCCCAGTAGTGAACCATATAGCCAGTCCATCTGCACCTGTCCGTCCTCGGCCAGACACGCGGAACGCCACCTCCGCCTCCCAGTTGTCAAAGTTGACTGGAGATTTGGTCCATACTGAACCTTTCTGGCTGCGCAGGGAGGGGGTGATCCGGATCTGATCTGCACTCGGAATGGCACTCCCCGTGTGAACCCAGAAGGGGATGCTCCCGTCCCGGCTCAGATGGGGACCCTTGAAGCTGTATTTGTACTCGAAGCGCCGGTGAGGCGCGTCCCCGCCACCGCCGCTGCCACCGACCCTGCCACCGGCACTGGCACTGTCACCGGCACCGGCACCGCCGGCTGCCTCCTGCTGCTCCGCGTGCACACTCACGCACACCACCAACACCGCTACCGCCGCTACCAGCGCGCGCGCCGCCATCTTTCCCTCTCTGC

Function

symbol description
lman1 Predicted to enable mannose binding activity. Acts upstream of or within cellular response to estrogen stimulus. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in several cellular components, including COPII-coated ER to Golgi transport vesicle; Golgi membrane; and endoplasmic reticulum-Golgi intermediate compartment. Is expressed in several structures, including axis; hatching gland; head; immature eye; and optic primordium. Human ortholog(s) of this gene implicated in factor V deficiency and factor XIII deficiency. Orthologous to human LMAN1 (lectin, mannose binding 1).

NR:

description
PREDICTED: protein ERGIC-53

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU171383 True 869 TUCP 0.56 6 33865504 33875369

Neighbor

gene id symbol gene type direction distance location
grp NA coding upstream 41020 33817577 ~ 33824484 (+)
nedd4l nedd4l,LOC108438193 coding upstream 146916 33584321 ~ 33718588 (+)
LOC103034578 LOC108436926,LOC107749412,LOC107558139 coding upstream 395196 33463282 ~ 33470308 (+)
nop56 nop56,LOC107661748 coding upstream 455071 33401338 ~ 33410433 (+)
LOC103034246 LOC108278657,LOC108437744,LOC106565181 coding upstream 467057 33386247 ~ 33398447 (+)
LOC111188203 NA coding downstream 599981 34475350 ~ 34476683 (+)
LOC103023802 LOC108438099,LOC107741960 coding downstream 626213 34501582 ~ 34526554 (+)
LOC103036996 rxra coding downstream 975622 34850991 ~ 35134718 (+)
LOC103032475 brd3,brd3a coding downstream 1278555 35153924 ~ 35163028 (+)
LOC103029836 NA coding downstream 1652052 35527421 ~ 35536244 (+)
G126902 NA non-coding upstream 5418 33851965 ~ 33860086 (+)
LOC103037053 NA non-coding upstream 53280 33806116 ~ 33812224 (+)
G126834 NA non-coding upstream 182542 33681112 ~ 33682962 (+)
G126798 NA non-coding upstream 330260 33532111 ~ 33535244 (+)
G126777 NA non-coding upstream 415177 33425273 ~ 33450327 (+)
G126943 NA non-coding downstream 144444 34019813 ~ 34020034 (+)
G126959 NA non-coding downstream 273698 34149067 ~ 34192055 (+)
G126992 NA non-coding downstream 479328 34354697 ~ 34360466 (+)
G127048 gtf3c4 non-coding downstream 729790 34605159 ~ 34607294 (+)
G127075 gsna,LOC108438059,LOC107708352,LOC107741952 non-coding downstream 892427 34767796 ~ 34775786 (+)
dnajc21 dnajc21 other upstream 356582 33412538 ~ 33508922 (+)
trnam-cau_22 NA other upstream 377383 33488050 ~ 33488121 (+)
G126708 NA other upstream 1002048 32862881 ~ 32863456 (+)
G126702 NA other upstream 1032038 32832962 ~ 32833466 (+)
G126632 NA other upstream 1462673 32402190 ~ 32402831 (+)
LOC103022855 hcn1,LOC108438107,LOC100334297,LOC107085810,LOC107749006,LOC107662227,LOC107701955,LOC107719071 other downstream 214721 34090090 ~ 34286886 (+)
LOC103040215 esm1 other downstream 582612 34457981 ~ 34464996 (+)
LOC103023469 NA other downstream 603257 34478626 ~ 34482387 (+)
stom stom,LOC107741953,LOC107556938,LOC107708355 other downstream 843427 34718796 ~ 34756129 (+)
vav2 vav2 other downstream 1296147 35171516 ~ 35464602 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G512782 NA non-coding CI01000353 null 1818901 ~ 1819619 (+)