G126959


Basic Information

Item Value
gene id G126959
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035910.1
NCBI id CM008313.1
chromosome length 38842236
location 34149067 ~ 34192055 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU171453
ACTAACAGTATAAGAGTGGTGCAGGGAGTTGAATGCAGCAGGTCATttagtccagtccagtccaatCCAATCCttccctccatccatctctccttTTCACACGCTatctctccctcctcctcctcctcctcttctcggtccctctctttttctcactctctctatctgtgaATTTAATCTGACCAGACTGCCTACTCAGTGCAGGGCGTTCTTGCCAAAcatccttctctctttttttctctctcacgcGCTCTGTTTCTCATTCCCCTGCTCTATACTCCATTAATGCACTCGTTCTCTGGGCTGCTGTGCCAGTCTCATCCCTTATGCTCTATAAactgagagagaaacaaacaacACACCTCTTTCCAATTGGATACTGGGTGCACTGAGAAGTTAATTGTTGGAATAAAGTGAAAATttgtatttgtgaatgtaatgaAGATATATGATATCTAATATATAGGTTTAATACGGAAAAATGAAAGGAGGACAATTGAAAGGAGAGGTACTGGCTCTGTTACCTTGTTGGGTACCTCTAGCCCGGATACAAGATCAGATACGGTTAGAAATGGAGGCAAACATATTTGTACATATATGTACAGCTCTAAAAAcaattgagaccacttcagtttctgaatcagtttctctgattttgctatttataggtttatgtttgagtaaaatgaacattattgttttattctataaaatacagacaacatttctcccaaattccaaataaaaatattgtcatttagagcatttaattgcagaaaatgagaaatgcctgaaataacaaaaaagatgcagaactttcagacctcaaataatgcaaagaaaacaagttcatattcataaaatttcagaaatcaatatttggtggaataaccctggttttaaatcac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU171453 True 908 lncRNA 0.38 2 34149067 34192055

Neighbor

gene id symbol gene type direction distance location
grp NA coding upstream 324583 33817577 ~ 33824484 (+)
nedd4l nedd4l,LOC108438193 coding upstream 430479 33584321 ~ 33718588 (+)
LOC103034578 LOC108436926,LOC107749412,LOC107558139 coding upstream 678759 33463282 ~ 33470308 (+)
nop56 nop56,LOC107661748 coding upstream 738634 33401338 ~ 33410433 (+)
LOC103034246 LOC108278657,LOC108437744,LOC106565181 coding upstream 750620 33386247 ~ 33398447 (+)
LOC111188203 NA coding downstream 283295 34475350 ~ 34476683 (+)
LOC103023802 LOC108438099,LOC107741960 coding downstream 309527 34501582 ~ 34526554 (+)
LOC103036996 rxra coding downstream 658936 34850991 ~ 35134718 (+)
LOC103032475 brd3,brd3a coding downstream 961869 35153924 ~ 35163028 (+)
LOC103029836 NA coding downstream 1335366 35527421 ~ 35536244 (+)
G126943 NA non-coding upstream 129033 34019813 ~ 34020034 (+)
G126902 NA non-coding upstream 288981 33851965 ~ 33860086 (+)
LOC103037053 NA non-coding upstream 336843 33806116 ~ 33812224 (+)
G126834 NA non-coding upstream 466105 33681112 ~ 33682962 (+)
G126798 NA non-coding upstream 613823 33532111 ~ 33535244 (+)
G126992 NA non-coding downstream 162642 34354697 ~ 34360466 (+)
G127048 gtf3c4 non-coding downstream 413104 34605159 ~ 34607294 (+)
G127075 gsna,LOC108438059,LOC107708352,LOC107741952 non-coding downstream 575741 34767796 ~ 34775786 (+)
G127077 gsna non-coding downstream 590015 34782070 ~ 34796546 (+)
G127086 NA non-coding downstream 629630 34821685 ~ 34821907 (+)
G126903 lman1,LOC107662211,LOC107739740 other upstream 273698 33865504 ~ 33875369 (+)
dnajc21 dnajc21 other upstream 640145 33412538 ~ 33508922 (+)
trnam-cau_22 NA other upstream 660946 33488050 ~ 33488121 (+)
G126708 NA other upstream 1285611 32862881 ~ 32863456 (+)
G126702 NA other upstream 1315601 32832962 ~ 32833466 (+)
LOC103040215 esm1 other downstream 265926 34457981 ~ 34464996 (+)
LOC103023469 NA other downstream 286571 34478626 ~ 34482387 (+)
stom stom,LOC107741953,LOC107556938,LOC107708355 other downstream 526741 34718796 ~ 34756129 (+)
vav2 vav2 other downstream 979461 35171516 ~ 35464602 (+)
G127250 NA other downstream 1284067 35476122 ~ 35492475 (+)

Expression


Co-expression Network