G127048 (gtf3c4)


Basic Information

Item Value
gene id G127048
gene name gtf3c4
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035910.1
NCBI id CM008313.1
chromosome length 38842236
location 34605159 ~ 34607294 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU171555
GCCAGATGTGTCCGTTACTGCATGCAGCCTGCTTGCGGTCAGTAAAGGGCAAAATCTCTTTACACAGGTTGCAGTGCTCTGGGAACGTCTGCTTGTTCATCTTGTTCATTATGTGACCAATCAGAACCTTGGCAGCTCTATCTTCATTGGTCGGGTCGTTGGAGAGGAAGTCGCAGAGCCCTTTGGTGGGGATGCAGGTGTTCTCAGTGATGAGCGTGTGGAGATACACCTCTCCCAGCACCCTCTTCATGTGCTCACGCGTCAGGTGAGACTCCACCTCTTCAATCCACGCCGTAATCTCATTCACCTGCTCCTCACTAAACTCTCCTTTAGCCTTCTTCTCCCTGAGCTCCTCCAGGCCAGAGGTCTCGGCCACCTGACTGACCTCCCCCTGCTCGGCCTCCTCAGCAGGAGCTCCGCCCGCCTCCTCTTCACCCACAAACACCTTACTGTCCTGGTGCGAGGGTTTCCAGAGGGCCTCCGTTGGTGCCTTCTGCATGGACTGGTAGAGAATGCGGAGGAGGAAGAGCTTGAAGCGCCAAAGGTACGTGGAGCCCGTGGTGTGCACCTTATCGTCCAGCTCGTCCTGGAGAAACGGAGGGATGCACCTGTCCTTCAGCACCCGCCAGCGCACCAGGTCCAGCAGGTCCGTCTGCCGGTAGAGGTTCTGCAGCTGTGACTCCAGAAGCTCGGCCGCAGCTTCGTCCGGCGTCTTCAGTGTGACGAACTGCAC

Function

symbol description
gtf3c4 Predicted to be part of transcription factor TFIIIC complex. Orthologous to human GTF3C4 (general transcription factor IIIC subunit 4).

NR:

description
PREDICTED: general transcription factor 3C polypeptide 4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU171555 True 733 lncRNA 0.58 2 34605159 34607294

Neighbor

gene id symbol gene type direction distance location
LOC103023802 LOC108438099,LOC107741960 coding upstream 78605 34501582 ~ 34526554 (+)
LOC111188203 NA coding upstream 128476 34475350 ~ 34476683 (+)
grp NA coding upstream 780675 33817577 ~ 33824484 (+)
nedd4l nedd4l,LOC108438193 coding upstream 886571 33584321 ~ 33718588 (+)
LOC103034578 LOC108436926,LOC107749412,LOC107558139 coding upstream 1134851 33463282 ~ 33470308 (+)
LOC103036996 rxra coding downstream 243697 34850991 ~ 35134718 (+)
LOC103032475 brd3,brd3a coding downstream 546630 35153924 ~ 35163028 (+)
LOC103029836 NA coding downstream 920127 35527421 ~ 35536244 (+)
LOC103030369 LOC103030369 coding downstream 936364 35543658 ~ 35554291 (+)
LOC103029511 NA coding downstream 960761 35568055 ~ 35574704 (+)
G126992 NA non-coding upstream 244693 34354697 ~ 34360466 (+)
G126959 NA non-coding upstream 413104 34149067 ~ 34192055 (+)
G126943 NA non-coding upstream 585125 34019813 ~ 34020034 (+)
G126902 NA non-coding upstream 745073 33851965 ~ 33860086 (+)
LOC103037053 NA non-coding upstream 792935 33806116 ~ 33812224 (+)
G127075 gsna,LOC108438059,LOC107708352,LOC107741952 non-coding downstream 160502 34767796 ~ 34775786 (+)
G127077 gsna non-coding downstream 174776 34782070 ~ 34796546 (+)
G127086 NA non-coding downstream 214391 34821685 ~ 34821907 (+)
G127097 NA non-coding downstream 237875 34845169 ~ 34845443 (+)
G127109 NA non-coding downstream 361379 34968673 ~ 34969093 (+)
LOC103023469 NA other upstream 122772 34478626 ~ 34482387 (+)
LOC103040215 esm1 other upstream 140163 34457981 ~ 34464996 (+)
LOC103022855 hcn1,LOC108438107,LOC100334297,LOC107085810,LOC107749006,LOC107662227,LOC107701955,LOC107719071 other upstream 318273 34090090 ~ 34286886 (+)
G126903 lman1,LOC107662211,LOC107739740 other upstream 729790 33865504 ~ 33875369 (+)
dnajc21 dnajc21 other upstream 1096237 33412538 ~ 33508922 (+)
stom stom,LOC107741953,LOC107556938,LOC107708355 other downstream 111502 34718796 ~ 34756129 (+)
vav2 vav2 other downstream 564222 35171516 ~ 35464602 (+)
G127250 NA other downstream 868828 35476122 ~ 35492475 (+)
glrx glrx,LOC105014469,LOC107661879 other downstream 1148050 35755344 ~ 35761112 (+)
ubap1 ubap1 other downstream 1221341 35828635 ~ 35838054 (+)

Expression


Co-expression Network