G127077 (gsna)


Basic Information

Item Value
gene id G127077
gene name gsna
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035910.1
NCBI id CM008313.1
chromosome length 38842236
location 34782070 ~ 34796546 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU171589
ACCGAGCCAGAAGTGGAGGTCGTACTGCAGGTTGCCAGAGCGCTGCTTGATAGTGTTCAGGATTACGTAGGCATCGCCGGTGTAGAATCCTCCATAGAGGTTCTCTGGCACGGCCACCAGGTCAAACTTCTCAATCCTCCACACCTGCAGGCCAGGCTGCTTTCCTGCCCGCTCGAACTCGGGGTGGGACACCATGCTTTCTCCTGCTGGCTGGCTGGTTTAGACAgggcctgctgctgctgctggaggaggttGAGCCACGCTGGAAGGAGGATCAGGGGGTTTAAACTGCAGGCTGCAGGCTGGAGGCTGGAGTCCTGAGTCCGGGCAAGGCAACACCCCTGTgagtcagtgagagagagagagcggtggTTAAAAACAGGGGGAATCCGGGCCTGCCCTGTCCTGTCTACcactcccactct

Function

symbol description
gsna Predicted to enable actin filament binding activity and phosphatidylinositol-4,5-bisphosphate binding activity. Predicted to be involved in several processes, including actin filament severing; actin polymerization or depolymerization; and barbed-end actin filament capping. Predicted to act upstream of or within actin filament capping; actin nucleation; and cell projection organization. Predicted to be located in cell projection and nucleus. Predicted to be active in actin cytoskeleton; cytoplasm; and extracellular space. Is expressed in several structures, including cardiovascular system; digestive system; nervous system; neural tube; and trigeminal placode. Human ortholog(s) of this gene implicated in Finnish type amyloidosis. Orthologous to human GSN (gelsolin).

NR:

description
Gsna protein, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU171589 True 425 lncRNA 0.59 2 34782070 34796546

Neighbor

gene id symbol gene type direction distance location
LOC103023802 LOC108438099,LOC107741960 coding upstream 255516 34501582 ~ 34526554 (+)
LOC111188203 NA coding upstream 305387 34475350 ~ 34476683 (+)
grp NA coding upstream 957586 33817577 ~ 33824484 (+)
nedd4l nedd4l,LOC108438193 coding upstream 1063482 33584321 ~ 33718588 (+)
LOC103034578 LOC108436926,LOC107749412,LOC107558139 coding upstream 1311762 33463282 ~ 33470308 (+)
LOC103036996 rxra coding downstream 54445 34850991 ~ 35134718 (+)
LOC103032475 brd3,brd3a coding downstream 357378 35153924 ~ 35163028 (+)
LOC103029836 NA coding downstream 730875 35527421 ~ 35536244 (+)
LOC103030369 LOC103030369 coding downstream 747112 35543658 ~ 35554291 (+)
LOC103029511 NA coding downstream 771509 35568055 ~ 35574704 (+)
G127075 gsna,LOC108438059,LOC107708352,LOC107741952 non-coding upstream 6284 34767796 ~ 34775786 (+)
G127048 gtf3c4 non-coding upstream 174776 34605159 ~ 34607294 (+)
G126992 NA non-coding upstream 421604 34354697 ~ 34360466 (+)
G126959 NA non-coding upstream 590015 34149067 ~ 34192055 (+)
G126943 NA non-coding upstream 762036 34019813 ~ 34020034 (+)
G127086 NA non-coding downstream 25139 34821685 ~ 34821907 (+)
G127097 NA non-coding downstream 48623 34845169 ~ 34845443 (+)
G127109 NA non-coding downstream 172127 34968673 ~ 34969093 (+)
G127122 NA non-coding downstream 297097 35093643 ~ 35094207 (+)
G127152 NA non-coding downstream 499815 35296361 ~ 35327393 (+)
stom stom,LOC107741953,LOC107556938,LOC107708355 other upstream 25941 34718796 ~ 34756129 (+)
LOC103023469 NA other upstream 299683 34478626 ~ 34482387 (+)
LOC103040215 esm1 other upstream 317074 34457981 ~ 34464996 (+)
LOC103022855 hcn1,LOC108438107,LOC100334297,LOC107085810,LOC107749006,LOC107662227,LOC107701955,LOC107719071 other upstream 495184 34090090 ~ 34286886 (+)
G126903 lman1,LOC107662211,LOC107739740 other upstream 906701 33865504 ~ 33875369 (+)
vav2 vav2 other downstream 374970 35171516 ~ 35464602 (+)
G127250 NA other downstream 679576 35476122 ~ 35492475 (+)
glrx glrx,LOC105014469,LOC107661879 other downstream 958798 35755344 ~ 35761112 (+)
ubap1 ubap1 other downstream 1032089 35828635 ~ 35838054 (+)
G127359 NA other downstream 1138373 35934919 ~ 35943122 (+)

Expression


Co-expression Network