ubap1 (ubap1)


Basic Information

Item Value
gene id ubap1
gene name ubap1
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035910.1
NCBI id CM008313.1
chromosome length 38842236
location 35828635 ~ 35838054 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU171969
TTAAGGGCTGCATAAAACTgatgttttctttttagttttcaagtcttcttttaaagttagggcttttatttgttttatgtccatccatctattcattatatttatgtaacaacataataatgcaataacaccattttctgttttttttttttcccttgtTTAATCATATGTTCATTTTGTTGAGCTGTTTAATAGGCAAGAACATTTTTGGgttcattttgtcattttagagATTCTCAGATTCTGTTTCTTCGCCTTCTGTTATAGGAACTTGATTAACAGGACTAAATACCACAGTATGTATATGTTTGGAGATAAAAGACATGATGAGAAAAAGACGAGAAAAGGAAAACTGGTTGGCTTTTGCACTGGAATGGACAGCACGTTtaatggaaaaagagagaacgaAAAGTTGTGAATAAGTGAAAATGGAAATGCAATATTTAAACGTCAAAGCATTCTCATAAAAATGACATGCAAGTCTGGAAACTGCACAGGCACACCGAATCACAGATATTAATATAaacttatttaaatgtgttcaaagatacactgacactttcaatctgtaataaaataaagacttagAAATGATTTACCATTGGCGAGT
>XM_007253927.3
ACCCAGGAACCAGAGGAGGGGAGGCCGCTCTGAGCAAGATGGCGACCCGCGATGAAGCAGGAAACACATTCGGTTTTGTGTAATTTTCCTCGGTGTAGAGCCTCTGCGGGACGGTGTATGCTGGAGGAAGGGTGAGAAGAGTTTCTGGAGAACCTGGACTGAGCGGATACGGACACTCTAAATGGCTGCGAGGAAGTCTGGATCAGATATCCACAATAATGGACCGATCAGCTACCTTGATGATGTTCCTTTCAAGCTCAATGAGAAGTTTCGCTGCCCAGCTAAAGTGGGTCTACCCATTGGCTTCTGTTTGCCCGACTGCCAGTCTTTACTGTCACAGACACAGTATGACTTCTCCTTGGAGAAACTGAGCGCACGCTGGGGTGAGAACCTGGCCAAGGCACGAGCTGACGAGGCTCAGGCAGCAGAGTTAAGACAAGCGGAATCTGAGAAAGACAGGCAGGCTGCCTCACAGGACAGTGACTCTGGATTAGCCCATTCTGCTGAAGAACAGGACCTCCTCCCGCCTGCGCTGAATCCTGTCCTGGCAGGTCTCCGGCACAACGCCATCCTGACCCCGCTCCCCGCCCCGAGCTTTGGACCAGCACAACCAGCGCCCAACAACCCAGCCCCCCAGAGCCTGAACCTGGCTGACTTTGAGCGAGAGGAGGACCCCTTCGACAAGCTGGAGCTCAAAACGCTGGATGATAAAGAGGAGCTGCGTAGCATCCTTCAGAGCCAACCACAGTCCTCTGTCTCAGCTCCTGAGCCCACTCCTCCAGAACCTCACCCTCCCTCACAGAGCAACACCCCACCTCTGCAGGTCAAATCAGCCCTCTTCCATAAACCCAACGGGCTGGTAGGGTTGTTGGACTTGGAGCGTCCGGGTTCTGGGGGCGTTGCGATTCCCAGAGGACAGATTGACGCCGATCGCCCCTGCAACATTCGCTCTTTAACTTTCCCCAAGTTGTCGGACCCAGGGGATTCTCCCTCAGAGCCCCCTCTTAACCTGTACCCAGCACCCACTCCACGCAGCCTCCCGAACGGTACCCCACCGTCGCTGCTGAGATCAACAGTACACTCTAATAATTCTATCTCTGGAGAACTGTCTACACACGCCCAGAATGGAACACCAAAGCAGTCACACCCTGTCCCCGCGTCTGTCCCTCCCTCATACCAAACACCAGCCAGCGGGGTGCTCCTCAGCCTGTCCCCCAGCGAGCGGCAGTGTGTGGAGACCATAGTGAGCATGGGCTACTCTTACGAGGGGGTTCTCAAAGCCATGCAGAGACAGGGGCAGAACGTCGAACAGATTCTGGAGTACCTTTTTGTTCACGGTCGACTGTGTGAGCGAGGCTTTGATGCCACTGCTGTGGAAGAGTGTTTGGAGATGTACCAGTGCTCTGAGGAAAAGGCCCTGCAGTTTCTTCAGCTGATGTCTCGGTTCGGCGAGATGGGTTTTGAGAGAGACGCCATTAAAGAGGTTCTGATTGTGCACAATAACGATCAGGACAAAGCTCTGGAGGACTTGATGGCCCGTGCTGCTGCAAGCTGAACCAGAGAGCTGTCTCCTCCTAGAGCCACCCTTTCCTTTGCCCCTCAACACTGCGACCACAGGGAGAcagaagagcgagagagagagagagagagagagagagtgaaggaaaCAGAGGTAGGGGTGTAGGCTGTGGGACAGGGTGTCAGACAGGATTAATAAATATGTACCCCTTAAACATCATAAGCCCTTTGAGGCAGGGTTTGACTGGACCGTGCAGTGCCACCTTCATCCCGCCTCAGCTATAACCCTGATAAGTGATCTTAGAGTGGTTGTGGGTGAAAGGAGACTGAGCCTCGTcggtggagcagcagcagcagcagggtttGCTTGTTTCTCCGTCGCCGTGGATTAGGGGGCGGAACTGGCAGATTATTGGGTGGAGCTGAAGAGGGAGACGGAGCCAAGTGGGAGCCCAGTTCCACAGGACATTGACTCACCACTCACAGCTACAAAGCTGCCATCTATCGCTGCTGGGCGCAGGCTTTCAAAACTGATGGGAACtttatacataaacacacacgtacagaaatacatacatacatgcatacacacaccacacacacacacacatatttaaacaGAGAACTCAAAGAAGTGCCCTCTCTGTTTCTGCTACTGACTGGCTTTCATTTTCTCCGATCTGTtcctgctgtttgtttttttcccccttgtTTAATCATATGTTCATTTTGTTGAGCTGTTTAATAGGCAAGAACATTTTTGGgttcattttgtcattttagagATTCTCAGATTCTGTTTCTTCGCCTTCTGTTATAGGAACTTGATTAACAGGACTAAATACCACAGTATGTATATGTTTGGAGATAAAAGACATGATGAGAAAAAGACGAGAAAAGGAAAACTGGTTGGCTTTTGCACTGGAATGGACAGCACGTTtaatggaaaaagagagaacgaAAAGTTGTGAATAAGTGAAAATGGAAATGCAATATTTAAACGTCAAAGCATTCTCATAAAAATGACATGCAAGTCTGGAAACTGCACAGGCACACCGAATCACAGATATTAATATAaacttatttaaatgtgttcaaagatacactgacactttcaatctgtaataaaataaagacttagAAATGATTTACCA
>XM_015607055.2
CCAGGAACCAGAGGAGGGGAGGCCGCTCTGAGCAAGATGGCGACCCGCGATGAAGCAGGAAACACATTCGGTTTTGTGTAATTTTCCTCGGTGTAGAGCCTCTGCGGGACGGTGTATGCTGGAGGAAGGACACTCTAAATGGCTGCGAGGAAGTCTGGATCAGATATCCACAATAATGGACCGATCAGCTACCTTGATGATGTTCCTTTCAAGCTCAATGAGAAGTTTCGCTGCCCAGCTAAAGTGGGTCTACCCATTGGCTTCTGTTTGCCCGACTGCCAGTCTTTACTGTCACAGACACAGTATGACTTCTCCTTGGAGAAACTGAGCGCACGCTGGGGTGAGAACCTGGCCAAGGCACGAGCTGACGAGGCTCAGGCAGCAGAGTTAAGACAAGCGGAATCTGAGAAAGACAGGCAGGCTGCCTCACAGGACAGTGACTCTGGATTAGCCCATTCTGCTGAAGAACAGGACCTCCTCCCGCCTGCGCTGAATCCTGTCCTGGCAGGTCTCCGGCACAACGCCATCCTGACCCCGCTCCCCGCCCCGAGCTTTGGACCAGCACAACCAGCGCCCAACAACCCAGCCCCCCAGAGCCTGAACCTGGCTGACTTTGAGCGAGAGGAGGACCCCTTCGACAAGCTGGAGCTCAAAACGCTGGATGATAAAGAGGAGCTGCGTAGCATCCTTCAGAGCCAACCACAGTCCTCTGTCTCAGCTCCTGAGCCCACTCCTCCAGAACCTCACCCTCCCTCACAGAGCAACACCCCACCTCTGCAGGTCAAATCAGCCCTCTTCCATAAACCCAACGGGCTGGTAGGGTTGTTGGACTTGGAGCGTCCGGGTTCTGGGGGCGTTGCGATTCCCAGAGGACAGATTGACGCCGATCGCCCCTGCAACATTCGCTCTTTAACTTTCCCCAAGTTGTCGGACCCAGGGGATTCTCCCTCAGAGCCCCCTCTTAACCTGTACCCAGCACCCACTCCACGCAGCCTCCCGAACGGTACCCCACCGTCGCTGCTGAGATCAACAGTACACTCTAATAATTCTATCTCTGGAGAACTGTCTACACACGCCCAGAATGGAACACCAAAGCAGTCACACCCTGTCCCCGCGTCTGTCCCTCCCTCATACCAAACACCAGCCAGCGGGGTGCTCCTCAGCCTGTCCCCCAGCGAGCGGCAGTGTGTGGAGACCATAGTGAGCATGGGCTACTCTTACGAGGGGGTTCTCAAAGCCATGCAGAGACAGGGGCAGAACGTCGAACAGATTCTGGAGTACCTTTTTGTTCACGGTCGACTGTGTGAGCGAGGCTTTGATGCCACTGCTGTGGAAGAGTGTTTGGAGATGTACCAGTGCTCTGAGGAAAAGGCCCTGCAGTTTCTTCAGCTGATGTCTCGGTTCGGCGAGATGGGTTTTGAGAGAGACGCCATTAAAGAGGTTCTGATTGTGCACAATAACGATCAGGACAAAGCTCTGGAGGACTTGATGGCCCGTGCTGCTGCAAGCTGAACCAGAGAGCTGTCTCCTCCTAGAGCCACCCTTTCCTTTGCCCCTCAACACTGCGACCACAGGGAGAcagaagagcgagagagagagagagagagagagagagtgaaggaaaCAGAGGTAGGGGTGTAGGCTGTGGGACAGGGTGTCAGACAGGATTAATAAATATGTACCCCTTAAACATCATAAGCCCTTTGAGGCAGGGTTTGACTGGACCGTGCAGTGCCACCTTCATCCCGCCTCAGCTATAACCCTGATAAGTGATCTTAGAGTGGTTGTGGGTGAAAGGAGACTGAGCCTCGTcggtggagcagcagcagcagcagggtttGCTTGTTTCTCCGTCGCCGTGGATTAGGGGGCGGAACTGGCAGATTATTGGGTGGAGCTGAAGAGGGAGACGGAGCCAAGTGGGAGCCCAGTTCCACAGGACATTGACTCACCACTCACAGCTACAAAGCTGCCATCTATCGCTGCTGGGCGCAGGCTTTCAAAACTGATGGGAACtttatacataaacacacacgtacagaaatacatacatacatgcatacacacaccacacacacacacacatatttaaacaGAGAACTCAAAGAAGTGCCCTCTCTGTTTCTGCTACTGACTGGCTTTCATTTTCTCCGATCTGTtcctgctgtttgtttttttcccccttgtTTAATCATATGTTCATTTTGTTGAGCTGTTTAATAGGCAAGAACATTTTTGGgttcattttgtcattttagagATTCTCAGATTCTGTTTCTTCGCCTTCTGTTATAGGAACTTGATTAACAGGACTAAATACCACAGTATGTATATGTTTGGAGATAAAAGACATGATGAGAAAAAGACGAGAAAAGGAAAACTGGTTGGCTTTTGCACTGGAATGGACAGCACGTTtaatggaaaaagagagaacgaAAAGTTGTGAATAAGTGAAAATGGAAATGCAATATTTAAACGTCAAAGCATTCTCATAAAAATGACATGCAAGTCTGGAAACTGCACAGGCACACCGAATCACAGATATTAATATAaacttatttaaatgtgttcaaagatacactgacactttcaatctgtaataaaataaagacttagAAATGATTTACCA

Function

symbol description
ubap1 Predicted to enable ubiquitin binding activity. Acts upstream of or within axon extension. Predicted to be located in cytosol and endosome. Predicted to be part of ESCRT I complex. Human ortholog(s) of this gene implicated in hereditary spastic paraplegia. Orthologous to human UBAP1 (ubiquitin associated protein 1).

NR:

description
unnamed protein product

GO: NA

KEGG:

id description
K24629 UBAP1; ubiquitin-associated protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
TU171969 False 610 lncRNA 0.31 2 35835524 35838054
XM_007253927.3 True 2672 mRNA 0.51 7 35828635 35838045
XM_015607055.2 False 2629 mRNA 0.51 7 35828637 35838045

Neighbor

gene id symbol gene type direction distance location
nudt2 nudt2,LOC107661859,LOC107739745,LOC107579639 coding upstream 16928 35809505 ~ 35811707 (+)
ell2 ell2 coding upstream 81629 35717435 ~ 35747006 (+)
LOC103028363 LOC108437782 coding upstream 117458 35706224 ~ 35711177 (+)
pcsk1 pcsk1,LOC107739678 coding upstream 129532 35671315 ~ 35699103 (+)
LOC103029511 NA coding upstream 253931 35568055 ~ 35574704 (+)
LOC103026124 LOC108436592,LOC106955578,LOC104953222 coding downstream 13360 35851414 ~ 35865427 (+)
LOC103043841 LOC103043841 coding downstream 132055 35970109 ~ 35975545 (+)
LOC103043535 NA coding downstream 138730 35976784 ~ 35980086 (+)
jak2 jak2 coding downstream 143814 35981868 ~ 36040966 (+)
zer1 zer1,LOC107717741,LOC106570444 coding downstream 368240 36206294 ~ 36223911 (+)
G127291 NA non-coding upstream 77257 35750262 ~ 35751378 (+)
G127279 NA non-coding upstream 125528 35650119 ~ 35703107 (+)
G127264 NA non-coding upstream 192063 35555911 ~ 35636572 (+)
G127362 NA non-coding downstream 109336 35947390 ~ 35948045 (+)
G127375 NA non-coding downstream 144644 35982698 ~ 35983876 (+)
G127386 NA non-coding downstream 229873 36067927 ~ 36094480 (+)
G127379 NA non-coding downstream 230281 36068335 ~ 36069013 (+)
G127378 NA non-coding downstream 231365 36069419 ~ 36072536 (+)
glrx glrx,LOC105014469,LOC107661879 other upstream 67523 35755344 ~ 35761112 (+)
G127250 NA other upstream 336160 35476122 ~ 35492475 (+)
vav2 vav2 other upstream 364033 35171516 ~ 35464602 (+)
stom stom,LOC107741953,LOC107556938,LOC107708355 other upstream 1072506 34718796 ~ 34756129 (+)
LOC103023469 NA other upstream 1346248 34478626 ~ 34482387 (+)
G127359 NA other downstream 96865 35934919 ~ 35943122 (+)
G127365 NA other downstream 116804 35954858 ~ 35958301 (+)
dtwd2 dtwd2 other downstream 128280 35966334 ~ 35969453 (+)
G127393 NA other downstream 337739 36175793 ~ 36177113 (+)
G127414 sh3pxd2b,LOC108413712 other downstream 558839 36396893 ~ 36401487 (+)

Expression


Co-expression Network