G127359


Basic Information

Item Value
gene id G127359
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035910.1
NCBI id CM008313.1
chromosome length 38842236
location 35934919 ~ 35943122 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU172005
gcattaagttatccaaaagcagtgtgtaagactggtggaggagaacatTATGAccaaattttatttggaatttgtgaaaaatgttgtttgaagtttatagaataaaacaacaatgttcattttactcaaaaataaacctataaatagcaaaatcagagaaactgattcagaaacggaagtgttctcttcattttttttccagagctgtatattaattaataatctgGCTCAGTACATTTTTAAGGAGTGCTGGTGAAATACTGCCTGCCTTCTGCTGCCTATTTTAATCAGTCTTggttaaaatactttaaatctcatttgtttaatacttcagtttccttttctttattttccttaacttcagtctctctccttcactccatCTCCTCCTGCTCGTCCACCATGGTAAAGATGTCGCTGAAGAAATATGCAGAAACGCTGGtgggctcctcctcctcctcctctgtgcTCGGGTTTTTTGTGTCGGGTTTGTGTGTTTCGGGCTCTGCGTTTACCTCTGGATCTGGGGCGGGTGTGACCGTAGGTGAAGGATTAAGTCTGGAGGATTTCTGGGAAGTAGAAGCTGATCTGGAGGTGGAGGTAAGAGGACCTGGAGCCGCCCGTCTTCTCTCAGAACGAGACGTGTTTATGGCCGGTTTCTGAGGGCCTGCTGCGGACCCCCTGGAAGCCGATGAAGGACCCTGTGTGCTTGTGCTGGACATGAAGGACAAGAAGCCTCTGGGTCTCCT
>TU172006
TTTTTTCAATGTTTAGGTAGTCATAAaattttattaacatatttacatatcTGGAAATGTAATTATTACACCGGTTTGTAAACAACTTGCACAAAACTTGACAATGACTCAACTTTCCAACACTGAAATGTAATCTGCATAATCTGTACTGTCAATACAGGCAGGCAGcaatgaaatatataatataaaaactcaTAGAGAATCAAATAACAGGATAAAACCTGTACatttatcagtgtttttcaaCCCTGCCccactgccctgcacattttagtgtttttcctTTATTAAAACACCCAATACAATTCAATATACACTAAGAAATACACTAAAAAGTGCAGGCCAATTGAAATCAGAGGATCAGGATTGAGAAATACTGCTAATagacacatacagctctggaacaaaataggaaaccacttaaaaattttgcaccaggagtaaagcagcataaagttatctaaaagcagtgtgtaagactggtggaggagaacatattGAACATATGAccaaattttatttggaatttgtgaaaaatgttgtttgaagtttatagaataaaacaacaatgttcattttactcaaaaataaacctataaatagcaaaatcagagaaactgattcagaaacggaagtgttctcttcattttttttccagagctgtatattaattaataatctgGCTCAGTACATTTTTAAGGAGTGCTGGTGAAATACTGCCTGCCTTCTGCTGCCTATTTTAATCAGTCTTggttaaaatactttaaatctcatttgtttaatacttcagtttccttttctttattttccttaacttcagtctctctccttcactccatCTCCTCCTGCTCGTCCACCATGGTAAAGATGTCGCTGAAGAAATATGCAGAAACGCTGGtgggctcctcctcctcctcctctgtgcTCGGGTTTTTTGTGTCGGGTTTGTGTGTTTCGGGCTCTGCGTTTACCTCTGGATCTGGGGCGGGTGTGACCGTAGGTGAAGGATTAAGTCTGGAGGATTTCTGGGAAGTAGAAGCTGATCTGGAGGTGGAGGTAAGAGGACCTGGAGCCGCCCGTCTTCTCTCAGAACGAGACGTGTTTATGGCCGGTTTCTGAGGGCCTGCTGCGGACCCCCTGGAAGCCGATGAAGGACCCTGTGTGCTTGTGCTGGACATGAAGGACAAGAAGCCTCTGGGTCTCCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU172005 False 749 TUCP 0.43 3 35934919 35943122
TU172006 True 1205 lncRNA 0.39 3 35940506 35943122

Neighbor

gene id symbol gene type direction distance location
LOC103026124 LOC108436592,LOC106955578,LOC104953222 coding upstream 69492 35851414 ~ 35865427 (+)
nudt2 nudt2,LOC107661859,LOC107739745,LOC107579639 coding upstream 123212 35809505 ~ 35811707 (+)
ell2 ell2 coding upstream 187913 35717435 ~ 35747006 (+)
LOC103028363 LOC108437782 coding upstream 223742 35706224 ~ 35711177 (+)
pcsk1 pcsk1,LOC107739678 coding upstream 235816 35671315 ~ 35699103 (+)
LOC103043841 LOC103043841 coding downstream 26987 35970109 ~ 35975545 (+)
LOC103043535 NA coding downstream 33662 35976784 ~ 35980086 (+)
jak2 jak2 coding downstream 38746 35981868 ~ 36040966 (+)
zer1 zer1,LOC107717741,LOC106570444 coding downstream 263172 36206294 ~ 36223911 (+)
LOC103041373 NA coding downstream 375010 36318132 ~ 36322205 (+)
G127291 NA non-coding upstream 183541 35750262 ~ 35751378 (+)
G127279 NA non-coding upstream 231812 35650119 ~ 35703107 (+)
G127264 NA non-coding upstream 298347 35555911 ~ 35636572 (+)
G127362 NA non-coding downstream 4268 35947390 ~ 35948045 (+)
G127375 NA non-coding downstream 39576 35982698 ~ 35983876 (+)
G127386 NA non-coding downstream 124805 36067927 ~ 36094480 (+)
G127379 NA non-coding downstream 125213 36068335 ~ 36069013 (+)
G127378 NA non-coding downstream 126297 36069419 ~ 36072536 (+)
ubap1 ubap1 other upstream 96865 35828635 ~ 35838054 (+)
glrx glrx,LOC105014469,LOC107661879 other upstream 173807 35755344 ~ 35761112 (+)
G127250 NA other upstream 442444 35476122 ~ 35492475 (+)
vav2 vav2 other upstream 470317 35171516 ~ 35464602 (+)
stom stom,LOC107741953,LOC107556938,LOC107708355 other upstream 1178790 34718796 ~ 34756129 (+)
G127365 NA other downstream 11736 35954858 ~ 35958301 (+)
dtwd2 dtwd2 other downstream 23212 35966334 ~ 35969453 (+)
G127393 NA other downstream 232671 36175793 ~ 36177113 (+)
G127414 sh3pxd2b,LOC108413712 other downstream 453771 36396893 ~ 36401487 (+)
LOC103040450 atp2a2b,LOC108444117,LOC108278817,LOC103365013 other downstream 710175 36653297 ~ 36709049 (+)

Expression


Co-expression Network