LOC103023802 (LOC108438099,LOC107741960)


Basic Information

Item Value
gene id LOC103023802
gene name LOC108438099,LOC107741960
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035910.1
NCBI id CM008313.1
chromosome length 38842236
location 34501582 ~ 34526554 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007246072.3
GTATCGGCGGGTGGCCCAGGGACCCGTCAGACAGGACAGGAGGCCGTGAGAGAgcagtctgagagagagcaacccatccccccccccccaacgtCCATCTCAGCCGCTCGCCCTCCACACCTCCACACAGCCAGCTCCATCATGGCCAGAGAACAGCTCAATGTGGGGGACTTGCTCCCTCTCCTGGAGACCGCTGATCTCCAGCAGCTCGATGAAATCAAAGGTCTTATCAACGAACACCTCAGTACAGAGCGAGGATCCATGCTCCTGAATGGCTTGGTGGATTACGTCCTGGAGACCAACTCGACCCAAGCCATGCACATCCTGTGTTCAGTGAGAGAACCGCATGACAAGCACCTCTTTGATAAGATGAACGAGTGCATGGCTAGGCAGGCGTGTCGTTTGCCCACTCTTAACCTGTTGGGCCAAGTGGTCCGCAAGCAGCCGTCCTGGATTCACAAGATCGCCCGCTATCCTTTGCTGCTCTCCCTGCTCAAATGCCTCAAGACGGACACAGATGTTGTGGTTCTCATAACTGGTGTGCTGGTGCTGGTGACCCTACTTCCCATGATCCCTCAGGCTGGGAAGCAGCATCTGTATGAGTTTTTTGACGTCTTTGGCCGCCTGGCTGCCTGGAACCTGAGGAATCCAGGACACGTTTCAGAAGTATACCTGATCCACCTGCATGCTAGCGTCTATTCACTCTTCCATCGCCTTTATGGCATGTACCCCTGCAACTTCATCTCCTACCTGCGCTCACATTACAGTATGAAGGAGAACATGGACACCTTCGAGGAGGTCGTTAagCCAATGCTTGAACATGTGCGCATACACCCAGAATTAGTGACTGGAACCAAGGACCATGAGCTTGACCCTACCAGGTGGAAGAGGTTTGAAATCCATGATATTGTGATTGAGTGTGCCAAAGTATCTCTGGACCCGCGGGAGGCGTCCTGTGAGGAGGGTTACTCCACTCTGCCCGAGCACTTCTGTGGTCAGCTGCACTTGCGCCCTCCTGATTGCACTGCCAGCCCTTACACTGACTTCCTCAGCAGCTATGGAAGTTCATCTTCGACTCAGTTCTCCACCCCGCGGCAGCCTGTCCTCCCTCCCCTCCCCCTGACCTCTCTCTCAGGGACCCAGCCGGCCTACCGCAGCTCTCCCAGCTCCCGCCGACCCAACTCTAGCTGTGAATTCAACTCCATTTACGGCATCAAGGACACTCTCTGGAGCCCCTCCTCCCAGTGTGGTATGGCCACGCCTCCTTCGTCAAGAGGGATGTCACCAAACCCTGAGCTATCCCAGAGTGCCTTTCACCTGTCCGGTCGCTTTCACAGCACTCCAGCTGGTGGTAAAGGTACCCCGTGTTCCAGCACTCCTGCTGCATCCTCTCCTCCCCCAAGTCTCACTGAGGAGTTGCCCTCTGGGTCTCTGCACCACAGCACAACCAGCCTGACATGCAAGGATGGAAGGCCAATTGACTCCAGCAAACCTCCCTTACTGAGGCAGGAACCAATCAGAGAGCTTGAGAAAGCAGGGGGTGAGGTGACCAACCACAGAGATTCTGCGACTGAGACTGTGTCGATGACGCTGACTGAGCTTTCGGTCTACATGAAGGAGCAGGAGCAGCTGCGGATGGGAAAGGAGAGGGAGGAGGCTGCCATCACAGAGGAGTTACTCCAGCTGACAGAGGAGAAGCGTGATCCAGGTGGGCTGCATGGCTTTGACTCTCCGTTCTTCCACACCACAGAGACCCTCACCGGAGCCCAGCAAAAACCCCCGTCCACGTCCACCCAGAGCAGCCTTCTCCGAGAGGCCAACAACGCCGTCTCCACTCCAGACAAAACAGACACCCAGGTGGGGCACAGGGGCATGGGCAGCCGTGGGCCTTCACAGGAGCAGCCCTGGTCCTTCCAACCAGTATTCACTCCCATCCAGGACCCGGCTCTTGGCCACGTCCGCCACAGCCCGGCTGCAGATGAAGAAGCTCTCAAATACAACCTGCTCTCACCCAGCCCGTGCAAGGCCCCCTCGCTCCCCTACGAGGCGCAGTTTGACCTGGCCCTGCCTCGCGCCGCATCCCTGTGTTTGGGCCACAGGACCTCGGAAGTGCTGGAGAGAGTGACGGGCGAGAGCAGGCTGGTAGATGTAAATGAGGCGGAAGATCACGCAACAACATCCGTGTCTCCTCTCGAGGTGCTAGACCGTCTCGTGCAGCAGGGCAGCGATGCCCACGACAAGGTGCTAAAGAGATTACCTCTGCCAAGCAAGTCAGCTGACTGGACTCACTTCGGAGGTTCTGCtcctctggatgaactgcagactCTGCGCagtcagctgctgctgctgcataaTCAGCTGCTCTATGAGCGGTATAAGCGTGAGCAGCATGCTGTGCGCAACCGCCGCCTCCTCCGCCGGATCATCAACGCCACATCGCTGGAGGAACAGAACAATGCCATGaaGGACCAGCTGAACCTGCAGAATGTGGACATCATGTCTCTGCGTGAGAGCCTCCAGGTTGAACAGCAGCGCTACAGGCAGCTGTGGGACGACCGGGAGACGATGGTCACGCGCCTGCACAGCCAAATCCGCCAGCTCCAGCAGAGCCGTGATGACTACTACACCAAGAACCAGGAGCTGCAGAGTAAGTTACAGGAGTGTCAGAAGAGGATGGGGGAGATGGAGGCGGACTTACAGAGGGCTAATAACAAAGTGTGCCACACAGGACACCAACTGAACCAGCTGACCGCCAAGTTGTCTACAAGTGAGAGTACCCAACAACAGCTGAGCTTCCTCAGCAAACAGTTGCTGCTCTTGGGGGAGGCGCATAAACTGTGTGTGCAAGAACTTCATCAAGCAAGCCCAGATATCACCAAGgaAGTCCAGATGTTACAGATGTCTTATGGGAAGGAGGTGGAGCGGCTTAAGCAGAACCTGCTGCTTCAGGGGCAGAAGCTGGACGCAGCACAGCAGAGAGTAGCAGAGCTGGAGACGCAGCTCTCCAAAAAAGAGCACCTGATCGCAGAGCAGAAGAAGTTCCTGGAGGACGTTAAGTGCCAGGCCAAGGAAGAGCTGCAGGCGTCTGACAGCAGGTACCACGCTCAAAGGTGTATAACGCAGGTGCTGCAGACAGAGCTGTTGCAGTTATACAGCAGGTTGGAGATAGAAGCTCCTACTACCACTGCTTCTGCTTCATCAGCAGGGAACACCAAAGAGCGCTGCGGCCCAGCAGAGACCAGTGTCCGGGTCTTGGATGGATCAGTTAAAGCTGTCTCTAAAGTGGCCCCTGCATTATCTCAGTCTTCGCACGGCAACGGCAGCATTTCGTCATCAGGGCAAGCCAAGTCCGTCAACGGCAGCCACAGCACCCCTCCTCCTGTGCTGGTGGAGCCACCACCTCTACGGCCGCACGTCCCGCTGGGGCCCCCTGGACCCCCGGCCCCCTCCGCAGCTGCACCCCTCACTGTGGGCTCCTACCCCAGCGCCAAGAGCTTCTTGGGCATGCGGGCGCGAGAGCTGTTCCGCAACAAGAGCGAGAGCCAGTGTGACGAGGACGAAGTCCTGCGTCCGCAGCTCACCGGCCTGTCGCAGGGCCTGAAGACTGAGCTGTGTGTAGAGCCGGCTGTAAAGACTGTGCCAGGGTCCGGGTCCGGGTCTGGGTCTGCCCTCGCCGTGGCGGCTAAAGCGGCACAGACCCACGGCCTGCAACGAGCCGCCAGCCGAGGAGAGGGTGGCGGGGCCTGCGGGACTCCGGCCCGGCCGAGGCAGCAACAGCTACGGATCATGGACTACAACGAAACCCATCAGGAGCACAGCTAGAGGGCGAGAAGGAGACAGAAGGTGAAAGCAAGCAAgcaaaagagtgaaagagaaagagagagagagagagagagagagaaggatgtgAAGGATGTGAAGGCTGTAGGCGCTGGTAAGAAAGGGAGAAAGCTGCAAGCTGAGATCGGATTACGCAGGACTCTTTTGATTTCAGTGTTATTTGTCCCATTCCCTCAAGCGGACAACAGGATTTGGTGTTTctcgc

Function

NR:

description
PREDICTED: hamartin-like

GO: NA

KEGG:

id description
K07206 TSC1; tuberous sclerosis 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007246072.3 True 4045 mRNA 0.57 21 34501582 34526554

Neighbor

gene id symbol gene type direction distance location
LOC111188203 NA coding upstream 24899 34475350 ~ 34476683 (+)
grp NA coding upstream 677098 33817577 ~ 33824484 (+)
nedd4l nedd4l,LOC108438193 coding upstream 782994 33584321 ~ 33718588 (+)
LOC103034578 LOC108436926,LOC107749412,LOC107558139 coding upstream 1031274 33463282 ~ 33470308 (+)
nop56 nop56,LOC107661748 coding upstream 1091149 33401338 ~ 33410433 (+)
LOC103036996 rxra coding downstream 324437 34850991 ~ 35134718 (+)
LOC103032475 brd3,brd3a coding downstream 627370 35153924 ~ 35163028 (+)
LOC103029836 NA coding downstream 1000867 35527421 ~ 35536244 (+)
LOC103030369 LOC103030369 coding downstream 1017104 35543658 ~ 35554291 (+)
LOC103029511 NA coding downstream 1041501 35568055 ~ 35574704 (+)
G126992 NA non-coding upstream 141116 34354697 ~ 34360466 (+)
G126959 NA non-coding upstream 309527 34149067 ~ 34192055 (+)
G126943 NA non-coding upstream 481548 34019813 ~ 34020034 (+)
G126902 NA non-coding upstream 641496 33851965 ~ 33860086 (+)
LOC103037053 NA non-coding upstream 689358 33806116 ~ 33812224 (+)
G127048 gtf3c4 non-coding downstream 78605 34605159 ~ 34607294 (+)
G127075 gsna,LOC108438059,LOC107708352,LOC107741952 non-coding downstream 241242 34767796 ~ 34775786 (+)
G127077 gsna non-coding downstream 255516 34782070 ~ 34796546 (+)
G127086 NA non-coding downstream 295131 34821685 ~ 34821907 (+)
G127097 NA non-coding downstream 318615 34845169 ~ 34845443 (+)
LOC103023469 NA other upstream 19195 34478626 ~ 34482387 (+)
LOC103040215 esm1 other upstream 36586 34457981 ~ 34464996 (+)
LOC103022855 hcn1,LOC108438107,LOC100334297,LOC107085810,LOC107749006,LOC107662227,LOC107701955,LOC107719071 other upstream 214696 34090090 ~ 34286886 (+)
G126903 lman1,LOC107662211,LOC107739740 other upstream 626213 33865504 ~ 33875369 (+)
dnajc21 dnajc21 other upstream 992660 33412538 ~ 33508922 (+)
stom stom,LOC107741953,LOC107556938,LOC107708355 other downstream 192242 34718796 ~ 34756129 (+)
vav2 vav2 other downstream 644962 35171516 ~ 35464602 (+)
G127250 NA other downstream 949568 35476122 ~ 35492475 (+)
glrx glrx,LOC105014469,LOC107661879 other downstream 1228790 35755344 ~ 35761112 (+)
ubap1 ubap1 other downstream 1302081 35828635 ~ 35838054 (+)

Expression


Co-expression Network