nudt2 (nudt2,LOC107661859,LOC107739745,LOC107579639)


Basic Information

Item Value
gene id nudt2
gene name nudt2,LOC107661859,LOC107739745,LOC107579639
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035910.1
NCBI id CM008313.1
chromosome length 38842236
location 35809505 ~ 35811707 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007253929.3
TGGGTGTGTTTCTACTGCGGCTGCGCAGTCTGTGAAACAGAAACCGGAAGTACAGGGTGTAAACATGTGCCCCATATAGGctataaatcagtgttttatcgCTTTTAGAAACATTattcagcagtttaaccccGTTTGGACATAATGGCACTGCGGGCATGTGGATTTATAATATTCCGGCGCCTGGCACAGACTTCTGTTGACAACATTGAATATCTTCTCCTGCAGACCTCCTATGGAGAACACCACTGGACTCCTCCTAAAGGTCACGTAGACCCCGGTGAGGATGACCTGACCACGGCGTGGAGGGAGACTCAGGAGGAGGCTGGTTTGGGTAAAGAGCACCTGCGTGTAGTTGATGGGTTTCTGCATAGACTGCATTATGAAGTTCGGGGCAGGCAGAAGGAGGTCCTCTATTGGCTGGCTGAGCTGCAGGACCCCAGAATAAATGTCACCCTGTCAGATGAGCACCAGGACTACCGCTGGGCCAGACTGGAGGAGGCATGCAAGCTGGCAAAGTACAAGGATCTGCAGGACACGCTTAAAGATGTACAGCAGTTTTTGGAAAAAGGGGAGGGTTTGAAACAGTGAACACCTGTTCTGTGTTAATGTAAGAAGAGGAGAAGCATTCTTACTGTTCAGCTTTCTGTTTTGTGAATATATTGGGGTCGTTTGGAGAATTTAACTTATTGCTTTGATCAATTTAGCACAGACAAATATAAGTTTAGGCAGATAATAGTAAATATAATCACAATGGATTTCCTGGAGATTTTCTGTACTGTATAATACTGACATTAAACAACAGCATAAGTCAATTCGTGATTTGACTGGTATATATGCATGTCAACTA
>XM_007253930.3
GGGTGTGTTTCTACTGCGGCTGCGCAGTCTGTGAAACAGAAACCGGAAGTACAGGGTGTAAACATGTGCCCCATATAGGctataaatcagtgttttatcgCTTTTAGAAACATTattcagcagtttaaccccGTTTGGACggttgccaggtgttTTTGAAGAGCCAGATCTCCTGCCTGTCAGAAGGGCATGACTTTTGAGTGATAATGGCACTGCGGGCATGTGGATTTATAATATTCCGGCGCCTGGCACAGACTTCTGTTGACAACATTGAATATCTTCTCCTGCAGACCTCCTATGGAGAACACCACTGGACTCCTCCTAAAGGTCACGTAGACCCCGGTGAGGATGACCTGACCACGGCGTGGAGGGAGACTCAGGAGGAGGCTGGTTTGGGTAAAGAGCACCTGCGTGTAGTTGATGGGTTTCTGCATAGACTGCATTATGAAGTTCGGGGCAGGCAGAAGGAGGTCCTCTATTGGCTGGCTGAGCTGCAGGACCCCAGAATAAATGTCACCCTGTCAGATGAGCACCAGGACTACCGCTGGGCCAGACTGGAGGAGGCATGCAAGCTGGCAAAGTACAAGGATCTGCAGGACACGCTTAAAGATGTACAGCAGTTTTTGGAAAAAGGGGAGGGTTTGAAACAGTGAACACCTGTTCTGTGTTAATGTAAGAAGAGGAGAAGCATTCTTACTGTTCAGCTTTCTGTTTTGTGAATATATTGGGGTCGTTTGGAGAATTTAACTTATTGCTTTGATCAATTTAGCACAGACAAATATAAGTTTAGGCAGATAATAGTAAATATAATCACAATGGATTTCCTGGAGATTTTCTGTACTGTATAATACTGACATTAAACAACAGCATAAGTCAATTCGTGATTTGACTGGTATATATGCATGTCAACTACA

Function

symbol description
nudt2 Predicted to enable bis(5'-nucleosyl)-tetraphosphatase (asymmetrical) activity. Predicted to be involved in AMP biosynthetic process and ATP biosynthetic process. Orthologous to human NUDT2 (nudix hydrolase 2).

NR:

description
bis(5'-nucleosyl)-tetraphosphatase [asymmetrical] isoform X4

GO:

id name namespace
GO:0008796 bis(5'-nucleosyl)-tetraphosphatase activity molecular_function

KEGG:

id description
K01518 NUDT2; bis(5'-nucleosidyl)-tetraphosphatase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007253929.3 False 850 mRNA 0.45 3 35809505 35811705
XM_007253930.3 True 914 mRNA 0.45 4 35809506 35811707

Neighbor

gene id symbol gene type direction distance location
ell2 ell2 coding upstream 62499 35717435 ~ 35747006 (+)
LOC103028363 LOC108437782 coding upstream 98328 35706224 ~ 35711177 (+)
pcsk1 pcsk1,LOC107739678 coding upstream 110402 35671315 ~ 35699103 (+)
LOC103029511 NA coding upstream 234801 35568055 ~ 35574704 (+)
LOC103030369 LOC103030369 coding upstream 255214 35543658 ~ 35554291 (+)
LOC103026124 LOC108436592,LOC106955578,LOC104953222 coding downstream 39707 35851414 ~ 35865427 (+)
LOC103043841 LOC103043841 coding downstream 158402 35970109 ~ 35975545 (+)
LOC103043535 NA coding downstream 165077 35976784 ~ 35980086 (+)
jak2 jak2 coding downstream 170161 35981868 ~ 36040966 (+)
zer1 zer1,LOC107717741,LOC106570444 coding downstream 394587 36206294 ~ 36223911 (+)
G127291 NA non-coding upstream 58127 35750262 ~ 35751378 (+)
G127279 NA non-coding upstream 106398 35650119 ~ 35703107 (+)
G127264 NA non-coding upstream 172933 35555911 ~ 35636572 (+)
G127274 NA non-coding upstream 204862 35596326 ~ 35604643 (+)
G127268 NA non-coding upstream 227513 35578546 ~ 35581992 (+)
G127362 NA non-coding downstream 135683 35947390 ~ 35948045 (+)
G127375 NA non-coding downstream 170991 35982698 ~ 35983876 (+)
G127386 NA non-coding downstream 256220 36067927 ~ 36094480 (+)
G127379 NA non-coding downstream 256628 36068335 ~ 36069013 (+)
G127378 NA non-coding downstream 257712 36069419 ~ 36072536 (+)
glrx glrx,LOC105014469,LOC107661879 other upstream 48393 35755344 ~ 35761112 (+)
G127250 NA other upstream 317030 35476122 ~ 35492475 (+)
vav2 vav2 other upstream 344903 35171516 ~ 35464602 (+)
stom stom,LOC107741953,LOC107556938,LOC107708355 other upstream 1053376 34718796 ~ 34756129 (+)
LOC103023469 NA other upstream 1327118 34478626 ~ 34482387 (+)
ubap1 ubap1 other downstream 16928 35828635 ~ 35838054 (+)
G127359 NA other downstream 123212 35934919 ~ 35943122 (+)
G127365 NA other downstream 143151 35954858 ~ 35958301 (+)
dtwd2 dtwd2 other downstream 154627 35966334 ~ 35969453 (+)
G127393 NA other downstream 364086 36175793 ~ 36177113 (+)

Expression


Co-expression Network