ell2 (ell2)


Basic Information

Item Value
gene id ell2
gene name ell2
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035910.1
NCBI id CM008313.1
chromosome length 38842236
location 35717435 ~ 35747006 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007253933.3
TCGCTATAGGCGCCTCCGACAGAGAGACTATGGTGGCAGGCTGGTAAAGATGGCTGCTCTCTCCGAGGATGGGAGGTATGGACTAAATTGTGGCCGAAATGCTGAAAGGATCACCGTATTGCACGTAAAACTGACCGAGACAGCCATACGAGCTCTAGAGAGCTACCAAAACTGTAAGAATGTACTGTCCTCGCGGCCAACAATACATTTCCAAGGACTTCAAGGGCGCATTAAGATTCCAAAGACCGATGTCTCAGACGGCTCTCATAACTTCGATTTTTACCTGTCCAACGTTGGCAAGGACAATCCTCAGGGAAGCTTTGAGTGCATCCAGCAGAATGTgtccagCTCTGGGGCATCCCACTTGTCATCTCTCGGGACCGTTCAGGACAAAATCACAGTCTGTGCCACAAACGATTCCTACCAGGTGACCAGAGAACGCATGACGCAGGCCGAAGAGGACACGCGCAAGAGGGGCACTAAAGTCATTAAACCAGGAGGGCAGTTCAGAGGTAAAACGGTCCAGATCCGAAAGCCAGCTCCCTCTGCGCCCGACCCCGTTCCGGAACGGAAGCGCTCCACCCCAATGAACCCAGCCAACACCATCCGTAAGTGCCTTACCAGCAACCCGGTGTCCCAGAGGCCATACCGGGACCGCATCGTCCACCTGCTGGCGCTGCGATCCTACAAGAAGCTGGAGGTCCTGGCCAGGCTGCAGCGAGACGGGATCAGCCAGAAGGACCGCAACTCGTTAGGAAGCACCTTACAGCAGGTTGCCAATCTGAACCCGAAGGATAACTCCTACTCACTAAAGGACTTTATGTACCGTGAGGTCCAGAGGGACTGGCCAGGATACTCTGAGGATGAGCGGATTCAGCTGGACAGGACCCTGGCTCGTAAACTGGGCCTGCCTGCAGATTCACTCTCATCCAGCAGTTCTCCCAAAGAACCAACATCGCCacagaaGCGCCAGCCTGAAGGTGACTTCATTGACCCTCTGATGCCCAAGAAGCCACGTATCTCCCACCTCAGTAACCGAGGTGCACCCAGCTCGTCGGAGCGTCGCACCCCTACGGAAGCTGAGGACAAGCGTTCTGCGCCGCCGGTTACTGCAGCCTGCCCTGGGCCCTCCTCCCAGCCTCCCGTCTCTCACCCCCCTTCTGGCTCTAACTCCAACTCCCCGAGCACGCCCGAGGGCCGCGGGACACAAGACCTGCCCCTGGACCAGAGCTCTACGTGTGGGGAAGAAGTAGAGCGCTATGCCCCCCGCACTCTGATGCCCAGCCCCCCAAGCCAGCCCAGCTTaatctcttcctcctcctcctcctccaccacaaCAGTCTCCAGCTCCACTGTCCTCCCCACCTCTGCCATGTCCCCAGCAGCCAGCAGTAGCAAAAAGCCCAAAAAGAAGTCCAAGAAGCACAAAGAGAAGGAGCGGGAGAGGGAAAAGGACAAGGGGCGACACCGAGAGGACCAGGTcagggaggaggagaggagagaggagaggtcCAGGAAAAGACCTCGCACTGAAGCAGAGGAGAGGTGTGCACCAGCCACCATGCACAGCCCTGCTTTAGACACGGAACTGCATAGTGAAGACAGAACAAGAAAATCTGACTTCACTGACCTTCCCACGCCGGTGATCCCTGATTACATAGCTAAGTACACTGCGGTGGTGTCCACAGACCAGAGGCAGGGATACAAGGACGACTTCAACGCCGAGTACGATGAGTATCGCGTCCTTCATGCTCGCGTGGAGAGCATAACACGGCGCTTCACCCAGCTGGACACTCAGTGCAGGCGCCTCCTGCCTGGAACCAAAGAGTACCAGGAGGTGCATGAAGAGGTGCTGCAAGAATACAAGAAAGTGAAACAACACAATCCAAACTACCACGAGGAGAAGCAACGCTGTGAATATCTGCACAACAAGCTGGCCCACATCAAGAGGCTCATTGCTGACTTTGACCAGCGGAGGGCGCAGTCCTGGCTTTAGGTGGGGCAGACGAAACAAAACAAGAccctgcagccaatcagagctctCCAAAAACCTCAAGAAAGACCACCACAGCCAGAGGGAGCGAGGGGATCAAAcaacctgattttttttcttttattttttcttttttttttcctcttttattcttattaaatgtCCCTTCTGAGTTTTCCCTTTAGTGTTCCTCCTCACTCCCTGTCACCCTGTGTGTTTTACAAGTGTCTACATTTCATTCATCATTCGTCCTCCCCTCTTCCCTTCTTTCCCTTttcccttctttttctttttctttctttcattatttttttccccatcccttccttttttttttctttttttttttttccttctcttttttatttcaagtgTTGTTCCTCCTGACCACTCATTTCCTCCGCTGTTTAAGAGAAGGGCGACACTACTCTTTACTCTTCTCTCCTGCGATCAGTGATGTCATGCATGTCCGGAGGACGTCTTATGctcaagccttttttttttttttttttttttta

Function

symbol description
ell2 Predicted to act upstream of or within transcription elongation from RNA polymerase II promoter. Predicted to be located in nucleus. Predicted to be part of transcription elongation factor complex. Is expressed in several structures, including anterior axial hypoblast; hatching gland; mesoderm; musculature system; and sensory system. Orthologous to human ELL2 (elongation factor for RNA polymerase II 2).

NR:

description
RNA polymerase II elongation factor ELL2-like

GO:

id name namespace
GO:0006368 transcription elongation from RNA polymerase II promoter biological_process
GO:0008023 transcription elongation factor complex cellular_component

KEGG:

id description
K15183 ELL; RNA polymerase II elongation factor ELL

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007253933.3 True 2511 mRNA 0.53 12 35717435 35747006

Neighbor

gene id symbol gene type direction distance location
LOC103028363 LOC108437782 coding upstream 6258 35706224 ~ 35711177 (+)
pcsk1 pcsk1,LOC107739678 coding upstream 18332 35671315 ~ 35699103 (+)
LOC103029511 NA coding upstream 142731 35568055 ~ 35574704 (+)
LOC103030369 LOC103030369 coding upstream 163144 35543658 ~ 35554291 (+)
LOC103029836 NA coding upstream 181191 35527421 ~ 35536244 (+)
nudt2 nudt2,LOC107661859,LOC107739745,LOC107579639 coding downstream 62499 35809505 ~ 35811707 (+)
LOC103026124 LOC108436592,LOC106955578,LOC104953222 coding downstream 104408 35851414 ~ 35865427 (+)
LOC103043841 LOC103043841 coding downstream 223103 35970109 ~ 35975545 (+)
LOC103043535 NA coding downstream 229778 35976784 ~ 35980086 (+)
jak2 jak2 coding downstream 234862 35981868 ~ 36040966 (+)
G127279 NA non-coding upstream 14328 35650119 ~ 35703107 (+)
G127264 NA non-coding upstream 80863 35555911 ~ 35636572 (+)
G127274 NA non-coding upstream 112792 35596326 ~ 35604643 (+)
G127268 NA non-coding upstream 135443 35578546 ~ 35581992 (+)
G127188 NA non-coding upstream 302664 35414319 ~ 35414771 (+)
G127291 NA non-coding downstream 3256 35750262 ~ 35751378 (+)
G127362 NA non-coding downstream 200384 35947390 ~ 35948045 (+)
G127375 NA non-coding downstream 235692 35982698 ~ 35983876 (+)
G127386 NA non-coding downstream 320921 36067927 ~ 36094480 (+)
G127379 NA non-coding downstream 321329 36068335 ~ 36069013 (+)
G127250 NA other upstream 224960 35476122 ~ 35492475 (+)
vav2 vav2 other upstream 252833 35171516 ~ 35464602 (+)
stom stom,LOC107741953,LOC107556938,LOC107708355 other upstream 961306 34718796 ~ 34756129 (+)
LOC103023469 NA other upstream 1235048 34478626 ~ 34482387 (+)
LOC103040215 esm1 other upstream 1252439 34457981 ~ 34464996 (+)
glrx glrx,LOC105014469,LOC107661879 other downstream 8338 35755344 ~ 35761112 (+)
ubap1 ubap1 other downstream 81629 35828635 ~ 35838054 (+)
G127359 NA other downstream 187913 35934919 ~ 35943122 (+)
G127365 NA other downstream 207852 35954858 ~ 35958301 (+)
dtwd2 dtwd2 other downstream 219328 35966334 ~ 35969453 (+)

Expression


Co-expression Network