LOC103029511


Basic Information

Item Value
gene id LOC103029511
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035910.1
NCBI id CM008313.1
chromosome length 38842236
location 35568055 ~ 35574704 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007253936.3
tctgcgagagagagagctgaggaAATCTAAAAAACTCAACAATTATcaggaaaagaaaatgaagtCCAGCGGCCTTCTAGTCCTTCTGCTGCTGATCTGTGGTGGTTCCTCTGAGGTGGTGAAAGATGGTGAATTTAAGGAGATTGTTTGTGATCCAAAAGAGCCCggacaaaatctgttttggttCCATCTGAAGGAGAACGGAATGATGGAGTTCATCGGAGCTTTCACCTCCGAAATTGGGACCAAAAAGACAGAAGTGAATGAAAAGAAATACGATATAACAAAGATGAAGAACAAGAAATTAATACTTAATTCTTTCAATAAGAAGGAGGACAGCGGCTCCTACATCTGTATGGTCATCAAGGGATCAACGCTGCACTTTGGTCAAGTGGTCAAACTGCAAGGAACCCCAGaTCCAGTACAAATACCCACACCGATCCAAACCACCAGAGCGGCAAAAGATCTCACAACTAAACAGACAGTGCTCTGCGAAAAGAGTGAAAAAGGGAAAACGACTCCCAGCGTTTCTGCGGTTCTCGGCTGTGAGCTGATGATTCTGATCCCTCTGGCTGCCGGCAGTGGCCTTCTTCTTATCGCGCTCATCATCACCATCCTCTACTGCAACCATATAAGAACAAGACGTTGCCCTCACCATTACAAACGACAtCACCAAAACAGACCAGCTGGACACAGACCCCTGCCTAATAAGGCTGAATTCTATCCCATGTGATGAAAAACCAACAGATCCTGCATCTTATCATTAATGATTAACAGGGAATCATTGTTATTCtgtatatctaaaaaaaaaaaaaaaacattgctttaaCAAAGCTTAGACTGTTAGTCCTTAATTAAGAATTTTACACTTAGCTTTCAGAAATGCCATCTTCACAGTAACTGCAGGATTACTTCTTAAATTTGATTTATTCACTTTGTTcatgttattattgcatttctttcattttattttattcatttcatttttcatttcatgCTACTGAAAATAAATGACCTTGTGTAGATCATATGAGGACAGATGCACCACTCCAAACAACACATCATGCTTTACTGAATTTTGCAGCCAAAATATTCTGCtcttcataaaaaaagaaagataaagattattttttatgaggTTTCTTGTCTCAGATATCAGGAGCGCCACCTGGTGGTAAAATAGAACTGTCATAATATATAAGAGACAATAAAAGTTCtggaataaatgtaataaactgtGCTTAGATTGATTTATATTGTAGTTACTGCTTGTAGAATAAATATGCTgctgtttactaaataaatagaaatagacAAAGAA

Function

GO: NA

KEGG:

id description
ko04660 T cell receptor signaling pathway

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007253936.3 True 1321 mRNA 0.38 6 35568055 35574704

Neighbor

gene id symbol gene type direction distance location
LOC103030369 LOC103030369 coding upstream 13764 35543658 ~ 35554291 (+)
LOC103029836 NA coding upstream 31811 35527421 ~ 35536244 (+)
LOC103032475 brd3,brd3a coding upstream 405027 35153924 ~ 35163028 (+)
LOC103036996 rxra coding upstream 433337 34850991 ~ 35134718 (+)
LOC103023802 LOC108438099,LOC107741960 coding upstream 1041501 34501582 ~ 34526554 (+)
pcsk1 pcsk1,LOC107739678 coding downstream 96611 35671315 ~ 35699103 (+)
LOC103028363 LOC108437782 coding downstream 131520 35706224 ~ 35711177 (+)
ell2 ell2 coding downstream 142731 35717435 ~ 35747006 (+)
nudt2 nudt2,LOC107661859,LOC107739745,LOC107579639 coding downstream 234801 35809505 ~ 35811707 (+)
LOC103026124 LOC108436592,LOC106955578,LOC104953222 coding downstream 276710 35851414 ~ 35865427 (+)
G127188 NA non-coding upstream 153284 35414319 ~ 35414771 (+)
G127152 NA non-coding upstream 240662 35296361 ~ 35327393 (+)
G127122 NA non-coding upstream 473848 35093643 ~ 35094207 (+)
G127109 NA non-coding upstream 598962 34968673 ~ 34969093 (+)
G127097 NA non-coding upstream 722612 34845169 ~ 34845443 (+)
G127268 NA non-coding downstream 3842 35578546 ~ 35581992 (+)
G127274 NA non-coding downstream 21622 35596326 ~ 35604643 (+)
G127279 NA non-coding downstream 75415 35650119 ~ 35703107 (+)
G127291 NA non-coding downstream 175558 35750262 ~ 35751378 (+)
G127362 NA non-coding downstream 372686 35947390 ~ 35948045 (+)
G127250 NA other upstream 75580 35476122 ~ 35492475 (+)
vav2 vav2 other upstream 103453 35171516 ~ 35464602 (+)
stom stom,LOC107741953,LOC107556938,LOC107708355 other upstream 811926 34718796 ~ 34756129 (+)
LOC103023469 NA other upstream 1085668 34478626 ~ 34482387 (+)
LOC103040215 esm1 other upstream 1103059 34457981 ~ 34464996 (+)
glrx glrx,LOC105014469,LOC107661879 other downstream 180640 35755344 ~ 35761112 (+)
ubap1 ubap1 other downstream 253931 35828635 ~ 35838054 (+)
G127359 NA other downstream 360215 35934919 ~ 35943122 (+)
G127365 NA other downstream 380154 35954858 ~ 35958301 (+)
dtwd2 dtwd2 other downstream 391630 35966334 ~ 35969453 (+)

Expression


Co-expression Network