LOC103029836


Basic Information

Item Value
gene id LOC103029836
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035910.1
NCBI id CM008313.1
chromosome length 38842236
location 35527421 ~ 35536244 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007253937.3
TGTTCATTTCAATGAACCGACGAACCGGTTCAggagatatattttttattgtcgtGCCCttcaaatttaattatttcttttcGATATTTCGAGTGAATTTGATGCtcaaagtaataaaaatgccaATGAATCAACAGAGAGACCGTAAATTTCGCCTAGATAAAAGTTAAAGTGAATCATCTGATTAGTTGAAAAACATCAGTTCAAGGGAGCCGATTCGCTGACGACTCGCACGTTCCTCAATAGCGGACATCTTCACTAGTGGCTAAAGCGGCTAGCTAGTGGGGTTCAGCTATGTTTAGTGAGGATTAGCGTGGTTTATTAGATTAAAGACCATCATGTCTGTGTTGGAAGGTGGCGTATCGTGTGGTGTAACGTTAGATGTGGAAAATAATGGTACAGTTTATCCAGATTCAGTGCAAACAGTACAAAACACTAACGCCCCTAGTTGTGATGTGGAAGACACGGGCAATGACAATGAACTTCTAAAAGGCCTTTTGACAGATACCTTCTGTCAGGTGTGTGAGGCAGTGCTGCTGTTTGAGTCTCAGAGAGTCTCTCATTATGAGGGGAAAAAACATGCTCAGAAAGTCAGACTCTACCTTCAGACTAAGAAAGCAGAAAGGATCATGCAAAGTCAAGCAAATAGCAGCTTTCAGAGCATTAATGTGAATCCTGAGAAGTTCTGTGAGCTGTGTAACATGGTGTTCAGCTCCCCGGTGGTTGCCAAGTCGCACTATGAGGGTAAAGTTCATTCCAAGAACATGAGAAAAAACGACACCACACCCACTACAGCAGATCTCAAGACCACAGCAGTTCCTGTGACTGTGCCAGTGGCTCCTCGGGAAGGTGCTATAGAAAGTAAAGCAGATCAGGAGCTGAAGGACAGTCCTGATTCTCCTCCGCAGGAGGTCAACCTCAACGACCCCGACAAATACTGCAAGCTGTGCACAGCCTCGTTCAACAACCCTGTTATGGCCCAGCAACACTACAGCGGTCGCAAGCACCAGCGCAACCAGGCTCGCCAGGAGATGCTCGGCAAACTGTCCTCGGAGTCTGAAACTGcaaaCACTCTAACATGTCCAGTGTGCTGTGTGACACTCAGCTCTGTGGAAACATATGAGGCTCACATGCAGGGCAACAAACACTTTGTGAAAGAAAAGAAGACAGTTGGTTTATGCAAATCTCAGAAGAAGGTGTACGACTCGTTTCAGGACGAGTTGGCCGACTACATCCAGGTGCAGAAATCTCGGGGGTTAGAACCCAAAGCAAAAGCAGAGGAGGAGCTGAATGACAGTGAATCGCTTGGGGAGGAGCCAGAAATGCCTCCTCCTTCATCACgtctgcctcctcctcctcctcatctctCTGCTCTTCCTTCTTTCCGTCCACCACAGTGGCGCCCACCATTTCAACCTCAAACTGGTCTTTTTGGCTACAGGGGCAGGTTCCCAACGCACTTAATGCAGCACCAGTGGGGTCAAGGCTACCCGCCACATCCCCCTCCTCTTATCCCTGGACTTACAGGTAGATCATTTCGTCGGGGGCGGAGTCCAAGCTCATttagctcctcctcctcataCTCTGACTCCTCCTCATCCTACAGTAGCAGCACCAGCAGAAGTcgtagcagcagcagtgacaGCGGCAGTGACAGCAGCAGTGACAGGAGAAGACAGAGgacgagaaagagaaaagaacgaatgatgaagaggaggagagagcaGGACGATGACTCCAACAAAGATGAGAGAAGAAGGAGCAGCAAGAGGAGGCGACGGGGAAGAGAAgacaaggaggaggaggaggaaggacaCACAAATAAAGctaagagagagaagaaagtggGTTTTGAGAAAGATGAAGATAAAGAAAGGAGAAAACGGAAGGAGAAAAGGCACAGAGGAGGAGACTCGAGTGAGGAAGATGAGCACGGGACTAAGAGAAGACTTGGCAAGAAgaacaggagagaaaaagaagtaCGTTATGGAAAGAGAAGGCGGGAGGAGGATAAAGAGGTGGCCAGGGAAGAGGGAGAAGAGCAGAGAGAAGGAGTGCAGATTAAAGGAGTGCAGTCCACAGCAGGGGAGCCTACAGAAGAAAGGACTGAACTTAGAGGAGAGGAGAAATCAAAGcgcaaaaaagagaagaagaaagcgAAGGGAAAGACAGACGAGGGAGACAAAAGGACAGAAGAGGAAAAGCTCTGGGATGAAACTATTTTGGgcatattttgatttttttgtgaacTATGTCCTGATCTTTTGCTCTGCACTGGTCTCAGATCAGTGCACCCTTGCTTGACAGACTATAATGTGAATCAGGAcagatttatttatgtgtttgacCTTGTTCACATTTGGCATTAGCATGTGTCCAAAGCTCATGTGTGAAcggtatatagtttttttttttttttttttttgaggatgcTCCATAATACGATCAATCAAACCACATTGGGAGATGGTCAGAGATATATACTCAGTGCATCCCTGACAGCAAAGCCCTGCTAACATTAATCATGTCACTTTAAACATGCACATTAAGCATAAGATCATACTGTCCATCAGAGTTAGCTAAGGATGCTAAAATAACAAGCTAATGGATGTAACTGACATTTGAACAAGCAAAATCTAAAGTCCTGTGTCTCGATTCAGGCTGATTATTCATTGCAAAGAAACATTAAGCACTCTAAGTGCAGTAGGCCCCAATCACACATTTAAatgagaaatccagtgtgaaatagacttggttgtagtgaaacacaataacaagtacaaacttttgttaaatagtccacctccattcacccccagcattcccaaatactctacttttagccaatgctcccaacaggctcaCACTGCTAGTGATAGGCACATtgcattgcccatgcaaagaaatcacttttttacaccattaataaGCTCAAATTAGCTTTAAAttagaactttgaaagtgcacaggttgcttattaacaataaactcatattaacaacaaacaaaactacAGCTGATATATTACGTGAATTACTAAGCGCTAGTTTTGGTCAGGAGTTGGCTAATATATTGCAACGATGGCAGAATTCAAGGGTTATTAAAATTGCAAACTGCGAGGCTCTGAGTGCTCCAGCGGACTAACGCAATGCCACTATTATCAGGAGATTgcgggttcgaatcccagtcatacagcttgccgtcagctgccggagccctgagagagcacaattggccttgctctctctgggtggtagattacagtagatggtgctctttctcctcatcactcctaaggtgatgtggatcagcacaagcctgcgtctgtgaactgatgtatctgtgatgctactcgacaagGCTGCTTCAGATGTATtgaaggaggcgtgtgctagtcttcaccctcctggtgttagggCATCGCTAATAATAGGGAGAATGCAGCTGAGTAGGTGGGACTATCTAAACAAGCTAAATTTGTGGAAAAAATAGAAGAGACTATAGTTATCATGACTCAGAATTTAATCAATGAATTGTGGAGCTACTTTTCTAATCATTCTAAGCCTGTTggaagcatcagctaaaagtgctgtattttggaatgcttgctatcatgtttcactgcaccccaagtccatttcacacctgaTTTCTCCTTTACATACTAGGTATTAACGGCTATGTTTTGGCAATCATTTGTGATCATATTACCCAGCACATATATTAATTACAAGTGTGAACAAGGGCCACACTTTTTGGTTTATCAGTGTTTTGGTTTATCTTTTTGTTCCAGTGTTCTTCTACAGAACCTCACTTctgtttttcagagctgaaaTCATGGTGATTTGTATTATGTATtgttgatatacagctctggaaaaaaaagaccacttccgtttctgaatcagtttctctgattttgctatttatag
>XM_007253938.3
TGTTCATTTCAATGAACCGACGAACCGGTTCAggagatatattttttattgtcgtGCCCttcaaatttaattatttcttttcGATATTTCGAGTGAATTTGATGCtcaaagtaataaaaatgccaATGAATCAACAGAGAGACCGTAAATTTCGCCTAGATAAAAGTTAAAGTGAATCATCTGATTAGTTGAAAAACATCAGTTCAAGGGAGCCGATTCGCTGACGACTCGCACGTTCCTCAATAGCGGACATCTTCACTAGTGGCTAAAGCGGCTAGCTAGTGGGGTTCAGCTATGTTTAGTGAGGATTAGCGTGGTTTATTAGATTAAAGACCATCATGTCTGTGTTGGAAGGTGGCGTATCGTGTGGTGTAACGTTAGATGTGGAAAATAATGGTACAGTTTATCCAGATTCAGTGCAAACAGTACAAAACACTAACGCCCCTAGTTGTGATGTGGAAGACACGGGCAATGACAATGAACTTCTAAAAGGCCTTTTGACAGATACCTTCTGTCAGGTGTGTGAGGCAGTGCTGCTGTTTGAGTCTCAGAGAGTCTCTCATTATGAGGGGAAAAAACATGCTCAGAAAGTCAGACTCTACCTTCAGACTAAGAAAGCAGAAAGGATCATGCAAAGTCAAGCAAATAGCAGCTTTCAGAGCATTAATGTGAATCCTGAGAAGTTCTGTGAGCTGTGTAACATGGTGTTCAGCTCCCCGGTGGTTGCCAAGTCGCACTATGAGGGTAAAGTTCATTCCAAGAACATGAGAAAAAACGACACCACACCCACTACAGATCTCAAGACCACAGCAGTTCCTGTGACTGTGCCAGTGGCTCCTCGGGAAGGTGCTATAGAAAGTAAAGCAGATCAGGAGCTGAAGGACAGTCCTGATTCTCCTCCGCAGGAGGTCAACCTCAACGACCCCGACAAATACTGCAAGCTGTGCACAGCCTCGTTCAACAACCCTGTTATGGCCCAGCAACACTACAGCGGTCGCAAGCACCAGCGCAACCAGGCTCGCCAGGAGATGCTCGGCAAACTGTCCTCGGAGTCTGAAACTGcaaaCACTCTAACATGTCCAGTGTGCTGTGTGACACTCAGCTCTGTGGAAACATATGAGGCTCACATGCAGGGCAACAAACACTTTGTGAAAGAAAAGAAGACAGTTGGTTTATGCAAATCTCAGAAGAAGGTGTACGACTCGTTTCAGGACGAGTTGGCCGACTACATCCAGGTGCAGAAATCTCGGGGGTTAGAACCCAAAGCAAAAGCAGAGGAGGAGCTGAATGACAGTGAATCGCTTGGGGAGGAGCCAGAAATGCCTCCTCCTTCATCACgtctgcctcctcctcctcctcatctctCTGCTCTTCCTTCTTTCCGTCCACCACAGTGGCGCCCACCATTTCAACCTCAAACTGGTCTTTTTGGCTACAGGGGCAGGTTCCCAACGCACTTAATGCAGCACCAGTGGGGTCAAGGCTACCCGCCACATCCCCCTCCTCTTATCCCTGGACTTACAGGTAGATCATTTCGTCGGGGGCGGAGTCCAAGCTCATttagctcctcctcctcataCTCTGACTCCTCCTCATCCTACAGTAGCAGCACCAGCAGAAGTcgtagcagcagcagtgacaGCGGCAGTGACAGCAGCAGTGACAGGAGAAGACAGAGgacgagaaagagaaaagaacgaatgatgaagaggaggagagagcaGGACGATGACTCCAACAAAGATGAGAGAAGAAGGAGCAGCAAGAGGAGGCGACGGGGAAGAGAAgacaaggaggaggaggaggaaggacaCACAAATAAAGctaagagagagaagaaagtggGTTTTGAGAAAGATGAAGATAAAGAAAGGAGAAAACGGAAGGAGAAAAGGCACAGAGGAGGAGACTCGAGTGAGGAAGATGAGCACGGGACTAAGAGAAGACTTGGCAAGAAgaacaggagagaaaaagaagtaCGTTATGGAAAGAGAAGGCGGGAGGAGGATAAAGAGGTGGCCAGGGAAGAGGGAGAAGAGCAGAGAGAAGGAGTGCAGATTAAAGGAGTGCAGTCCACAGCAGGGGAGCCTACAGAAGAAAGGACTGAACTTAGAGGAGAGGAGAAATCAAAGcgcaaaaaagagaagaagaaagcgAAGGGAAAGACAGACGAGGGAGACAAAAGGACAGAAGAGGAAAAGCTCTGGGATGAAACTATTTTGGgcatattttgatttttttgtgaacTATGTCCTGATCTTTTGCTCTGCACTGGTCTCAGATCAGTGCACCCTTGCTTGACAGACTATAATGTGAATCAGGAcagatttatttatgtgtttgacCTTGTTCACATTTGGCATTAGCATGTGTCCAAAGCTCATGTGTGAAcggtatatagtttttttttttttttttttttgaggatgcTCCATAATACGATCAATCAAACCACATTGGGAGATGGTCAGAGATATATACTCAGTGCATCCCTGACAGCAAAGCCCTGCTAACATTAATCATGTCACTTTAAACATGCACATTAAGCATAAGATCATACTGTCCATCAGAGTTAGCTAAGGATGCTAAAATAACAAGCTAATGGATGTAACTGACATTTGAACAAGCAAAATCTAAAGTCCTGTGTCTCGATTCAGGCTGATTATTCATTGCAAAGAAACATTAAGCACTCTAAGTGCAGTAGGCCCCAATCACACATTTAAatgagaaatccagtgtgaaatagacttggttgtagtgaaacacaataacaagtacaaacttttgttaaatagtccacctccattcacccccagcattcccaaatactctacttttagccaatgctcccaacaggctcaCACTGCTAGTGATAGGCACATtgcattgcccatgcaaagaaatcacttttttacaccattaataaGCTCAAATTAGCTTTAAAttagaactttgaaagtgcacaggttgcttattaacaataaactcatattaacaacaaacaaaactacAGCTGATATATTACGTGAATTACTAAGCGCTAGTTTTGGTCAGGAGTTGGCTAATATATTGCAACGATGGCAGAATTCAAGGGTTATTAAAATTGCAAACTGCGAGGCTCTGAGTGCTCCAGCGGACTAACGCAATGCCACTATTATCAGGAGATTgcgggttcgaatcccagtcatacagcttgccgtcagctgccggagccctgagagagcacaattggccttgctctctctgggtggtagattacagtagatggtgctctttctcctcatcactcctaaggtgatgtggatcagcacaagcctgcgtctgtgaactgatgtatctgtgatgctactcgacaagGCTGCTTCAGATGTATtgaaggaggcgtgtgctagtcttcaccctcctggtgttagggCATCGCTAATAATAGGGAGAATGCAGCTGAGTAGGTGGGACTATCTAAACAAGCTAAATTTGTGGAAAAAATAGAAGAGACTATAGTTATCATGACTCAGAATTTAATCAATGAATTGTGGAGCTACTTTTCTAATCATTCTAAGCCTGTTggaagcatcagctaaaagtgctgtattttggaatgcttgctatcatgtttcactgcaccccaagtccatttcacacctgaTTTCTCCTTTACATACTAGGTATTAACGGCTATGTTTTGGCAATCATTTGTGATCATATTACCCAGCACATATATTAATTACAAGTGTGAACAAGGGCCACACTTTTTGGTTTATCAGTGTTTTGGTTTATCTTTTTGTTCCAGTGTTCTTCTACAGAACCTCACTTctgtttttcagagctgaaaTCATGGTGATTTGTATTATGTATtgttgatatacagctctggaaaaaaaagaccacttccgtttctgaatcagtttctctgattttgctatttatag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007253937.3 True 3932 mRNA 0.44 7 35527421 35536244
XM_007253938.3 False 3929 mRNA 0.44 7 35527421 35536244

Neighbor

gene id symbol gene type direction distance location
LOC103032475 brd3,brd3a coding upstream 364393 35153924 ~ 35163028 (+)
LOC103036996 rxra coding upstream 392703 34850991 ~ 35134718 (+)
LOC103023802 LOC108438099,LOC107741960 coding upstream 1000867 34501582 ~ 34526554 (+)
LOC111188203 NA coding upstream 1050738 34475350 ~ 34476683 (+)
grp NA coding upstream 1702937 33817577 ~ 33824484 (+)
LOC103030369 LOC103030369 coding downstream 7414 35543658 ~ 35554291 (+)
LOC103029511 NA coding downstream 31811 35568055 ~ 35574704 (+)
pcsk1 pcsk1,LOC107739678 coding downstream 135071 35671315 ~ 35699103 (+)
LOC103028363 LOC108437782 coding downstream 169980 35706224 ~ 35711177 (+)
ell2 ell2 coding downstream 181191 35717435 ~ 35747006 (+)
G127188 NA non-coding upstream 112650 35414319 ~ 35414771 (+)
G127152 NA non-coding upstream 200028 35296361 ~ 35327393 (+)
G127122 NA non-coding upstream 433214 35093643 ~ 35094207 (+)
G127109 NA non-coding upstream 558328 34968673 ~ 34969093 (+)
G127097 NA non-coding upstream 681978 34845169 ~ 34845443 (+)
G127264 NA non-coding downstream 19667 35555911 ~ 35636572 (+)
G127268 NA non-coding downstream 42302 35578546 ~ 35581992 (+)
G127274 NA non-coding downstream 60082 35596326 ~ 35604643 (+)
G127279 NA non-coding downstream 113875 35650119 ~ 35703107 (+)
G127291 NA non-coding downstream 214018 35750262 ~ 35751378 (+)
G127250 NA other upstream 34946 35476122 ~ 35492475 (+)
vav2 vav2 other upstream 62819 35171516 ~ 35464602 (+)
stom stom,LOC107741953,LOC107556938,LOC107708355 other upstream 771292 34718796 ~ 34756129 (+)
LOC103023469 NA other upstream 1045034 34478626 ~ 34482387 (+)
LOC103040215 esm1 other upstream 1062425 34457981 ~ 34464996 (+)
glrx glrx,LOC105014469,LOC107661879 other downstream 219100 35755344 ~ 35761112 (+)
ubap1 ubap1 other downstream 292391 35828635 ~ 35838054 (+)
G127359 NA other downstream 398675 35934919 ~ 35943122 (+)
G127365 NA other downstream 418614 35954858 ~ 35958301 (+)
dtwd2 dtwd2 other downstream 430090 35966334 ~ 35969453 (+)

Expression


Co-expression Network