LOC103036996 (rxra)


Basic Information

Item Value
gene id LOC103036996
gene name rxra
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035910.1
NCBI id CM008313.1
chromosome length 38842236
location 34850991 ~ 35134718 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022676562.1
AGTGAGTTTCTGAGCTCGCTCTGAGAGCCAGGGCTGGtgcatgagaaagagagagaggaaacagtGAGAgcgagcgggagagagagagaccggaCCACTGATCAGACGTCTGCTCATCATcctgacatccagcagcagcatcCATGGACCCTTTCTACCTGGACATCCACATGGGGTTCCTGAAGCCCCAGTGCTCtctggctccgccccctcagaGAGGCCGTTCAGGGGAAGCATGCTCCTGTTTCACTGGCATGTGTCATCTCCATCAGCACAGACTGTCCACAGACTCATCAGGTCAGGTGACCTCGTCTCCCCTGAGCTCGCCTACGTCTCACCGTGGGATGCACCCGTCATTGCTCAGCCCGTCTTCCATCGGGGCCTCTGGGTCTCTCCACTCCCCCATCAGCACCCTCAGCTCACCCATGAACGGCCTGGGCTCTCCTTTCTCCGTCATCAGCTCTCCCATGGGCCCCCACTCTATGGCCTCCCCCGGGATGGGCTACGGCCCCAGCGTTAGCCCACAGCTGAATTCGCCAATGAACTCCGTCAGTAGCTCTGAGGACATCAAGCCTCCGCTGGGTCTAAACGGCGTGATGAAAGTACCCGCTCAGCCCTCGGGCACACCCATCTCCCTCACCAAACACATCTGTGCCATCTGTGGAGACCGCTCGTCTgGTAAACACTATGGCGTGTACAGCTGCGAGGGCTGCAAGGGCTTCTTTAAGAGGACCGTACGGAAGGACCTGACCTACACCTGCAGAGACAACAAAGACTGCATGATAGACAAACGCCAGCGCAACCGCTGCCAGTACTGCCGCTACCAGAAGTGTCTGGCCATGGGCATGAAGAGAGAAGCTGTCCAGGAGGAACGCCAGCGAGCCAAAGACCGAAACGAGAACGAGGTGGAGTCCACCAGCAGCGCCAACGAGGACATGCCCGTGGAGAAGATCCTGGAGGCCGAGCTGGCCGTCGAGCCCAAGACTGAGACTTACATCGAGACCAACCTGGGCATGCCGTCCAACTCACCGAATGATCCGGTCACTAATATCTGCCAGGCAGCAGATAAACAGCTCTTCACTCTGGTGGAGTGGGCCAAGAGGATCCCCCACTTCTCTGAACTGCCTCTGGATGATCAGGTCATCCTGCTGCGAGCAgGCTGGAATGAGCTGCTCATCGCATCGTTCTCGCATCGCTCCATAGCCGTGAAGGACGGCATCCTGCTGGCCACCGGGCTCCACGTGCACCGGAACAGCGCCCACTGCGCAGGAGTGGGAGCCATATTCGACAGGGTGCTGACGGAGTTGGTGTCGAAGATGAGAGATATGCAGATGGATAAAACAGAGCTGGGGTGTCTGCGTGCCATTGTGCTCTTTAATCCAGACTCCAAAGGCCTGTCGAACCCAGGGGAGGTGGAGGCTCTGAGGGAGAAGGTGTACGCCTCTCTGGAGGCCTACTGCAAGCAGAAATACCCTGAACAGCCTGGAAGGTTCGCCAAGCTGTTGCTGCGGCTGCCGGCGCTCCGCTCCATCGGCCTCAAGTGTCTGGAGCACCTGTTCTTCTTCAAGCTCATAGGGGACACGCCCATCGACACCTTCCTCATGGAGATGCTGGAGGCGCCCCACCAAATGACATAATGACATCGCAAACTCCCGTTGCCCAGGGAGACGGTCGGAAGGGGGCGAGGCGATGCTGCCCCTTCCTGCCCCTTCCTCCCAGTGAGACTGGACTGACGACGTGGCGTTATGGGCAGGAGAGCGCCCGTGCCCTCCACTTGAACGTTCCGCAAAAAGCGCGCTCATGGGCTTTCGTGCTCTTATGATTTgtataaagatataaatatataaataagtcgAAGTATCAGAGTATCATTGAGTGATGGATAAGTGATGTCGGCGGACTCAAAAGACGACTGAGGCTGTAGGCCACAGAGGCCACAGGAGCGAATCGCACCATCCGGAAAACTGCGGCCGATTGACGAAGCTTTGGAGAGACTctttggagagaaaaaaaaaaattggaaattggGTTGGCTGGAGGGACCAGGAACACAAACTGGTGGACGTACAGTAAGAAAGAAAGGCcttcagaaagaaagaataacagATGGATGCAGCTATGGGAATTGGATGACTGGGGGCACTGTTCTCTTGTTCTCTTGTTCTGGTGTTCTGATGTCCAAGCTTGCTCCAGCCGTCCAGCTGTGTTTATTCCTTTTTATAGGAACAGCAAGAATGAGCAAGAAAGAGGAGGAACTTtgcacaatcacaatcacactgGGGCCTCAGGTCTGATGTCCAATTCCAGTGTCTGACGTTGGATGTCCATGCCGGGCTGTCAAGGCTATAAAAGGCTGTATGAGGCAGTGTGAGGTCTCCAGGATGGAccaatgatgatgatggtagtgatgatggtggtgatgataatatcatataatgataatgatgagcTTTCCCTCCTTCCTGTGGAGCCAAGAGCCCAGTACTCTCCAACAACTGTCGGTTATAAACCAGAGACAGACATACGTACATACGTTCATACACACATTTCGTACAGTACGTACAGAAGTTAAGGTATAAAATTCATGGGCAGAGAAGCCTGGATGTTATTGGACGCCTTGGTGTTATTGACTCTGTAATGTTGTTTGCAGGGCCTTCGGCTTATGGTGATCGATCTGAGCTATACCGTCCCACTGTTCACTATAACTGTATCTGTGTGCTCAGAGCGTGGTTCCCTCCTC

Function

symbol description
rxra Enables several functions, including nuclear receptor activity; protein domain specific binding activity; and retinoic acid binding activity. Contributes to vitamin D response element binding activity. Involved in several processes, including intracellular receptor signaling pathway; regulation of transcription, DNA-templated; and response to retinoic acid. Acts upstream of or within positive regulation of transcription by RNA polymerase II. Located in chromatin and nucleus. Part of RNA polymerase II transcription regulator complex and receptor complex. Implicated in pancreatic cancer. Biomarker of pancreatic ductal carcinoma.

NR:

description
retinoic acid receptor RXR-alpha isoform X5

GO: NA

KEGG:

id description
K08524 RXRA, NR2B1; retinoid X receptor alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022676562.1 True 2740 mRNA 0.54 12 34850991 35134718

Neighbor

gene id symbol gene type direction distance location
LOC103023802 LOC108438099,LOC107741960 coding upstream 324437 34501582 ~ 34526554 (+)
LOC111188203 NA coding upstream 374308 34475350 ~ 34476683 (+)
grp NA coding upstream 1026507 33817577 ~ 33824484 (+)
nedd4l nedd4l,LOC108438193 coding upstream 1132403 33584321 ~ 33718588 (+)
LOC103034578 LOC108436926,LOC107749412,LOC107558139 coding upstream 1380683 33463282 ~ 33470308 (+)
LOC103032475 brd3,brd3a coding downstream 19206 35153924 ~ 35163028 (+)
LOC103029836 NA coding downstream 392703 35527421 ~ 35536244 (+)
LOC103030369 LOC103030369 coding downstream 408940 35543658 ~ 35554291 (+)
LOC103029511 NA coding downstream 433337 35568055 ~ 35574704 (+)
pcsk1 pcsk1,LOC107739678 coding downstream 536597 35671315 ~ 35699103 (+)
G127097 NA non-coding upstream 5548 34845169 ~ 34845443 (+)
G127086 NA non-coding upstream 29084 34821685 ~ 34821907 (+)
G127077 gsna non-coding upstream 54445 34782070 ~ 34796546 (+)
G127075 gsna,LOC108438059,LOC107708352,LOC107741952 non-coding upstream 75205 34767796 ~ 34775786 (+)
G127048 gtf3c4 non-coding upstream 243697 34605159 ~ 34607294 (+)
G127152 NA non-coding downstream 161643 35296361 ~ 35327393 (+)
G127188 NA non-coding downstream 279601 35414319 ~ 35414771 (+)
G127264 NA non-coding downstream 421193 35555911 ~ 35636572 (+)
G127268 NA non-coding downstream 443828 35578546 ~ 35581992 (+)
G127274 NA non-coding downstream 461608 35596326 ~ 35604643 (+)
stom stom,LOC107741953,LOC107556938,LOC107708355 other upstream 94862 34718796 ~ 34756129 (+)
LOC103023469 NA other upstream 368604 34478626 ~ 34482387 (+)
LOC103040215 esm1 other upstream 385995 34457981 ~ 34464996 (+)
LOC103022855 hcn1,LOC108438107,LOC100334297,LOC107085810,LOC107749006,LOC107662227,LOC107701955,LOC107719071 other upstream 564105 34090090 ~ 34286886 (+)
G126903 lman1,LOC107662211,LOC107739740 other upstream 975622 33865504 ~ 33875369 (+)
vav2 vav2 other downstream 36798 35171516 ~ 35464602 (+)
G127250 NA other downstream 341404 35476122 ~ 35492475 (+)
glrx glrx,LOC105014469,LOC107661879 other downstream 620626 35755344 ~ 35761112 (+)
ubap1 ubap1 other downstream 693917 35828635 ~ 35838054 (+)
G127359 NA other downstream 800201 35934919 ~ 35943122 (+)

Expression


Co-expression Network