G1016


Basic Information

Item Value
gene id G1016
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 3289505 ~ 3289918 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU1374
caagaggcttttattgtcattacatctgagtacaggtacacagtgtgatgaaattacgttcctccggaaccatggtgcaacatagaacaacaagcaatagacaacataaagtgcaggagtgacgacagtgcaacataaaattataacactaaataacaataaatacaataaatacaaaggacgagacaatttaaagacaggacagtgcagtaccgatacggtataataagtgtatagtggggataaggtgcagagatgtgtgacatactgtaacatatagaacatatataatcacagcagttactgaggtagagtttatagtttttaagagtgcagcaaataaagtcatgtcagcctctgtgtgctgactgggtgtgtgtgtgggtgaagttcagttcttgtgagtgtaaaggg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1374 True 414 lncRNA 0.41 1 3289505 3289918

Neighbor

gene id symbol gene type direction distance location
LOC103033918 LOC108431152,LOC106599103,LOC106568909,LOC108278312 coding downstream 72484 3189007 ~ 3217021 (-)
LOC111193343 prg4 coding downstream 109911 3163711 ~ 3179594 (-)
c1h1orf27 cunh1orf27,LOC103031066 coding downstream 174736 3099846 ~ 3114769 (-)
LOC103034573 pla2g4a,LOC107718137,LOC107677770,LOC107693742,LOC107722605,LOC107589895,LOC107594671 coding downstream 252671 2986333 ~ 3036834 (-)
LOC103032964 LOC108444491,LOC107722586,LOC107718136,LOC107693739,LOC107589867 coding downstream 361439 2916789 ~ 2928066 (-)
olfml2b olfml2b,LOC107718167 coding upstream 7895 3297813 ~ 3316021 (-)
LOC103033290 NA coding upstream 86692 3376610 ~ 3383122 (-)
LOC103028436 NA coding upstream 200954 3490872 ~ 3503293 (-)
LOC103032346 NA coding upstream 226706 3516624 ~ 3554189 (-)
LOC103032017 LOC108441573,LOC107693752 coding upstream 314268 3604186 ~ 3666404 (-)
G990 NA non-coding downstream 101523 3187503 ~ 3187982 (-)
G977 pdc,pdca,LOC108277616,LOC107693745,LOC107594646 non-coding downstream 140293 3092945 ~ 3149212 (-)
G963 NA non-coding downstream 228306 3060943 ~ 3061199 (-)
G958 NA non-coding downstream 239750 3049408 ~ 3049755 (-)
G952 NA non-coding downstream 288842 2995830 ~ 3000663 (-)
G1017 NA non-coding upstream 4658 3294576 ~ 3294782 (-)
G1013 NA non-coding upstream 6322 3296240 ~ 3297646 (-)
G1211 NA non-coding upstream 78885 3368803 ~ 3373615 (-)
G1214 NA non-coding upstream 95455 3385373 ~ 3386231 (-)
G1224 NA non-coding upstream 184271 3474189 ~ 3474864 (-)
LOC103032016 arpc5b,arpc5,LOC103032016,LOC108431159,LOC104921830,LOC107698380,LOC107599090,LOC103045524 other downstream 319165 2910754 ~ 2970340 (-)
G807 NA other downstream 688994 2550216 ~ 2600511 (-)
znf414 NA other downstream 855104 2423713 ~ 2434401 (-)
gtf2b tf2b,gtf2b,LOC107585659,LOC107693714,LOC107718116,LOC107691461 other downstream 1361250 1920480 ~ 1928255 (-)
yipf1 yipf1 other downstream 1416378 1864515 ~ 1873127 (-)
LOC103029371 agl,LOC108441576,LOC107722579 other upstream 104286 3394204 ~ 3445386 (-)
wdfy1 wdfy1,LOC106613124,LOC102785143,LOC103370589 other upstream 592452 3882370 ~ 3909671 (-)
G1308 NA other upstream 809847 4099765 ~ 4101566 (-)
LOC111193794 LOC108442858 other upstream 977083 4267001 ~ 4271970 (-)
LOC111193783 LOC108442858 other upstream 986991 4276909 ~ 4321340 (-)

Expression


Co-expression Network