G1224


Basic Information

Item Value
gene id G1224
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 3474189 ~ 3474864 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU1628
CCGACTCCAGTGTCCTCTGTAGATGAAAGGAAGAATGAAACCCACAAATGTGAAAATCACAGTCAGCATCATCAGACTATGATGCACatAAACCAGATTCTTTGTCCAAACAGGGTCTTTTCAGGCCAGTCTGGTTTGAAGAAGCCTGCCATGAAGATACCAGTGCTTCCCAACACCATCCACGCAAACAGCATCAGAGCAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1628 True 202 lncRNA 0.40 2 3474189 3474864

Neighbor

gene id symbol gene type direction distance location
LOC103033290 NA coding downstream 91067 3376610 ~ 3383122 (-)
olfml2b olfml2b,LOC107718167 coding downstream 158168 3297813 ~ 3316021 (-)
LOC103033918 LOC108431152,LOC106599103,LOC106568909,LOC108278312 coding downstream 257168 3189007 ~ 3217021 (-)
LOC111193343 prg4 coding downstream 294595 3163711 ~ 3179594 (-)
c1h1orf27 cunh1orf27,LOC103031066 coding downstream 359420 3099846 ~ 3114769 (-)
LOC103028436 NA coding upstream 16008 3490872 ~ 3503293 (-)
LOC103032346 NA coding upstream 41760 3516624 ~ 3554189 (-)
LOC103032017 LOC108441573,LOC107693752 coding upstream 129322 3604186 ~ 3666404 (-)
ap1s3 NA coding upstream 364005 3838869 ~ 3849326 (-)
serpine2 NA coding upstream 452236 3927100 ~ 3957131 (-)
G1214 NA non-coding downstream 87958 3385373 ~ 3386231 (-)
G1211 NA non-coding downstream 100574 3368803 ~ 3373615 (-)
G1013 NA non-coding downstream 176543 3296240 ~ 3297646 (-)
G1017 NA non-coding downstream 179407 3294576 ~ 3294782 (-)
G1016 NA non-coding downstream 184271 3289505 ~ 3289918 (-)
G1238 NA non-coding upstream 103365 3578229 ~ 3585540 (-)
G1234 NA non-coding upstream 120879 3595743 ~ 3599731 (-)
G1247 NA non-coding upstream 143368 3618232 ~ 3650378 (-)
G1267 NA non-coding upstream 404700 3879564 ~ 3881731 (-)
G1290 NA non-coding upstream 531298 4006162 ~ 4009880 (-)
LOC103029371 agl,LOC108441576,LOC107722579 other downstream 28803 3394204 ~ 3445386 (-)
LOC103032016 arpc5b,arpc5,LOC103032016,LOC108431159,LOC104921830,LOC107698380,LOC107599090,LOC103045524 other downstream 503849 2910754 ~ 2970340 (-)
G807 NA other downstream 873678 2550216 ~ 2600511 (-)
znf414 NA other downstream 1039788 2423713 ~ 2434401 (-)
gtf2b tf2b,gtf2b,LOC107585659,LOC107693714,LOC107718116,LOC107691461 other downstream 1545934 1920480 ~ 1928255 (-)
wdfy1 wdfy1,LOC106613124,LOC102785143,LOC103370589 other upstream 407506 3882370 ~ 3909671 (-)
G1308 NA other upstream 624901 4099765 ~ 4101566 (-)
LOC111193794 LOC108442858 other upstream 792137 4267001 ~ 4271970 (-)
LOC111193783 LOC108442858 other upstream 802045 4276909 ~ 4321340 (-)
LOC103031123 LOC108411357 other upstream 2228842 5703706 ~ 5721108 (-)

Expression


Co-expression Network