G1238


Basic Information

Item Value
gene id G1238
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 3578229 ~ 3585540 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU1670
caccaagaaggaccaaccacatccaacaggattaactgtggacgctgtaagaggaagctgtctgaaagggatgttcgggtgctaacccggattgtatccaaaaaaacataaaaccacggctgatcaaatcacgcagaattcagtgtgcacctcaactctcctgtttccaccagaactgtccgtcaccacaataaattattgtgatctaaaaccaggtgtttcagtttcattgtccaacccctgt

Function

GO: NA

KEGG:

id description
ko04370 VEGF signaling pathway

RNA

RNA id representative length rna type GC content exon number start site end site
TU1670 True 244 lncRNA 0.46 2 3578229 3585540

Neighbor

gene id symbol gene type direction distance location
LOC103032346 NA coding downstream 24040 3516624 ~ 3554189 (-)
LOC103028436 NA coding downstream 74936 3490872 ~ 3503293 (-)
LOC103033290 NA coding downstream 195107 3376610 ~ 3383122 (-)
olfml2b olfml2b,LOC107718167 coding downstream 262208 3297813 ~ 3316021 (-)
LOC103033918 LOC108431152,LOC106599103,LOC106568909,LOC108278312 coding downstream 361208 3189007 ~ 3217021 (-)
LOC103032017 LOC108441573,LOC107693752 coding upstream 18646 3604186 ~ 3666404 (-)
ap1s3 NA coding upstream 253329 3838869 ~ 3849326 (-)
serpine2 NA coding upstream 341560 3927100 ~ 3957131 (-)
LOC103026864 LOC107669897 coding upstream 383680 3969220 ~ 4005230 (-)
LOC111193700 NA coding upstream 448916 4034456 ~ 4037520 (-)
G1224 NA non-coding downstream 103365 3474189 ~ 3474864 (-)
G1214 NA non-coding downstream 191998 3385373 ~ 3386231 (-)
G1211 NA non-coding downstream 204614 3368803 ~ 3373615 (-)
G1013 NA non-coding downstream 280583 3296240 ~ 3297646 (-)
G1017 NA non-coding downstream 283447 3294576 ~ 3294782 (-)
G1234 NA non-coding upstream 10203 3595743 ~ 3599731 (-)
G1247 NA non-coding upstream 32692 3618232 ~ 3650378 (-)
G1267 NA non-coding upstream 294024 3879564 ~ 3881731 (-)
G1290 NA non-coding upstream 420622 4006162 ~ 4009880 (-)
G1301 NA non-coding upstream 493997 4079537 ~ 4081783 (-)
LOC103029371 agl,LOC108441576,LOC107722579 other downstream 132843 3394204 ~ 3445386 (-)
LOC103032016 arpc5b,arpc5,LOC103032016,LOC108431159,LOC104921830,LOC107698380,LOC107599090,LOC103045524 other downstream 607889 2910754 ~ 2970340 (-)
G807 NA other downstream 977718 2550216 ~ 2600511 (-)
znf414 NA other downstream 1143828 2423713 ~ 2434401 (-)
gtf2b tf2b,gtf2b,LOC107585659,LOC107693714,LOC107718116,LOC107691461 other downstream 1649974 1920480 ~ 1928255 (-)
wdfy1 wdfy1,LOC106613124,LOC102785143,LOC103370589 other upstream 296830 3882370 ~ 3909671 (-)
G1308 NA other upstream 514225 4099765 ~ 4101566 (-)
LOC111193794 LOC108442858 other upstream 681461 4267001 ~ 4271970 (-)
LOC111193783 LOC108442858 other upstream 691369 4276909 ~ 4321340 (-)
LOC103031123 LOC108411357 other upstream 2118166 5703706 ~ 5721108 (-)

Expression


Co-expression Network