G1267


Basic Information

Item Value
gene id G1267
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 3879564 ~ 3881731 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU1703
ttaaaacacaaagaaaattgtaaaaaaaaaaatctaacttatAAATTACAtcattaaatatttcaggtttattcaaaaatgaaaaaaatatataatttaaatatacaaaatgcagATTCAAATACTAATGCCAATTTTTAGAGGATagctaaaccccctgattttagctgactccaccctcagctcaaatttgagtagtttgggagaggcacagggtgatgtatgggtttagaggcggggcagtgTACCTATGATAGCTGTGAGACTCAGATGTTCggattatattattaattgattattGCCTATAGAACTTCAAAGTAACAAATTTcagttataaataaaaaaatatacatgatTTAGGctttagtgtctctttaagCTCCATACACTGTCTCCAGTGTGGGTGGGATGAAGAGATGCTGCTCAATAAACTTAATGAACTTATTAGAGAAGAGTCTTCATCAAATGTTGTGAACTTGCTTTTCTTTAGCATCTTCAGTATGAACTAATCgccgctgtccaataaaaaacacttatctccaaaacagcaactttacaggagagagaaaaaacttgtaaactttcagtggaagtcaatggaaaaagagtttattttaggtcattttgaagagtttctattggtccattcatcaatacattatggcacagtgtaagggacagtttgtctgttcaaattatgtagtaaactaaaaattgacgaAAATGGAGATAAGAATTTTTCATTATGGCGCTCTCACTTTAGCACTTCATTACTCTGTGCAGTGTGCCTGGTGTGTGGTTGCCCTGAGGGTGAGGAGCACTTGCAGCAGATTAAATTAGGTATCCAGAAAATCAGGAAAGCTTAAAGACCTTCAGAACATTtgtacaaaacatgtttttgcaCACTGCCGTATGTTGAGAACTCATTAGCATTACTTgtgtttttcgttttttttttttccttctattCTATATGTAGTAAAAACACTTCAGCTCCTTGTTGCAGATCTTTAAATCGAATTCTACAGACCTTGAATGAAACCATTAAATAAACCAGGTTGTTCAAACTGGGATCCTTTCAGTCCACAGCTCTACAGTCTGTCTTCTAATACTAACTAACGTTTTTTTGACCACTAACTCCCAACAGTTTTTGATGATCCTCCTTTGGTTCATAACAACATTGGAACCTTCTTGGTGCTTTAGATTcactttttacacacacatgccaaaagtcagggGATGCTAGCATGTAATTGTTCATGTAGTGTTACCTCAGGAAATGCCTGTATACctgtatacgttgtgaggtgttatcttgtgagtgaggctgaaaaTGGCAGTGTTCATGAACCCTGATGATAATTGATGGGTGCCAGATGGACTTCTGAAGCATTAAACAGTCCTCAGTCCACATCGTCATATGTACTGGGTAAACATTATATTACTACCCAAAGTGAACAGaactgtggatggtaatgattgtgaccggcggcATCTGGCTCGAATTGTCCATGCGAACAAAGAATGATTCTGGCAGAAATCCTTAATTGACCTCCTTTCTctttcaatgcaggagacccctcCCACTTATCCCACAGATCcatgcagtgttctttagcttccatgggtgatgacaaaagtcatgggacactagACTAGTCCTGTATACTTTGGGAATTTGGCATGTCAGAGTGTAAAACACTTACAGATTCTTTGTAACAGCAGTGCACTGTTTATTAGCGGATGCTGAATGACTTTATTGTCTGCAGAGTTGTGGCCCTGAAGGAGCCCGGTTTGACCCCTCTCATATGAATTATTAAAGGGCTGGTTGTCTGAACACAGGTTCAGTGGTGGTCTGCTGCTGTAGAGTATTCAGTGCAGCAGTAGCACCATTAACAGGGTATCTGAGGACGAGGTTTAAACTGTGGACAGAAAACCATTCCGACGTTTCTTTTTCCGTTTCTTCTTTTCTAATGTATCTTTTTGTACGAACTGCATTAGTTTGGGTAGTGACAGTATAGCGATGTCGTTCTTTCTCTGTGTAGAAAAGAACTCTAACATGTATTTTTACTATGATAAATTCATGttgataaactgaaacaatGACTTAAGTCTGCTATTGAGACTGTAATAAATGACTATTACT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1703 True 2146 lncRNA 0.50 2 3879564 3881731

Neighbor

gene id symbol gene type direction distance location
ap1s3 NA coding downstream 30238 3838869 ~ 3849326 (-)
LOC103032017 LOC108441573,LOC107693752 coding downstream 213160 3604186 ~ 3666404 (-)
LOC103032346 NA coding downstream 325375 3516624 ~ 3554189 (-)
LOC103028436 NA coding downstream 376271 3490872 ~ 3503293 (-)
LOC103033290 NA coding downstream 496442 3376610 ~ 3383122 (-)
serpine2 NA coding upstream 45369 3927100 ~ 3957131 (-)
LOC103026864 LOC107669897 coding upstream 87489 3969220 ~ 4005230 (-)
LOC111193700 NA coding upstream 152725 4034456 ~ 4037520 (-)
LOC111193716 NA coding upstream 170756 4052487 ~ 4052783 (-)
med29 med29 coding upstream 240387 4122118 ~ 4127226 (-)
G1247 NA non-coding downstream 229186 3618232 ~ 3650378 (-)
G1234 NA non-coding downstream 279833 3595743 ~ 3599731 (-)
G1238 NA non-coding downstream 294024 3578229 ~ 3585540 (-)
G1224 NA non-coding downstream 404700 3474189 ~ 3474864 (-)
G1214 NA non-coding downstream 493333 3385373 ~ 3386231 (-)
G1290 NA non-coding upstream 124431 4006162 ~ 4009880 (-)
G1301 NA non-coding upstream 197806 4079537 ~ 4081783 (-)
G1323 NA non-coding upstream 274870 4156601 ~ 4156840 (-)
G1324 NA non-coding upstream 279748 4161479 ~ 4161873 (-)
G1353 NA non-coding upstream 394107 4275838 ~ 4276794 (-)
LOC103029371 agl,LOC108441576,LOC107722579 other downstream 434178 3394204 ~ 3445386 (-)
LOC103032016 arpc5b,arpc5,LOC103032016,LOC108431159,LOC104921830,LOC107698380,LOC107599090,LOC103045524 other downstream 909224 2910754 ~ 2970340 (-)
G807 NA other downstream 1279053 2550216 ~ 2600511 (-)
znf414 NA other downstream 1445163 2423713 ~ 2434401 (-)
gtf2b tf2b,gtf2b,LOC107585659,LOC107693714,LOC107718116,LOC107691461 other downstream 1951309 1920480 ~ 1928255 (-)
wdfy1 wdfy1,LOC106613124,LOC102785143,LOC103370589 other upstream 639 3882370 ~ 3909671 (-)
G1308 NA other upstream 218034 4099765 ~ 4101566 (-)
LOC111193794 LOC108442858 other upstream 385270 4267001 ~ 4271970 (-)
LOC111193783 LOC108442858 other upstream 395178 4276909 ~ 4321340 (-)
LOC103031123 LOC108411357 other upstream 1821975 5703706 ~ 5721108 (-)

Expression


Co-expression Network