wdfy1 (wdfy1,LOC106613124,LOC102785143,LOC103370589)


Basic Information

Item Value
gene id wdfy1
gene name wdfy1,LOC106613124,LOC102785143,LOC103370589
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 3882370 ~ 3909671 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU1713
GgggaggagagggagggagaggtcGGGAAAAGAAAACAGCGATGGCGGCGGAGATCCACTCCAGGCCCCAGACCTCTAGACCTATCCTGCTCAATAAGATCGAGGGCCACCAGGACGCGGTGAACGCTGCCGTTCTGATCCCTAAGGAGGACGGAGTGATCACGGTCAGCGAGGACCGAACCATTCGAGTATGGCTGAAGAGAGATAGTGGACAGTACTGGCCCAGCATTTACCACACTGTGTCATCTCCATGCTCTTGCATGTCATACCACCATGAAAGCAGACGAATCTTCATAGGCCAGGACAATGGAGCTATTGTTGAGTTCCTCATCTCTGAAGATTTTAACAAGATGAACCAG
>XM_022674974.1
CCGCTCCGGgggaggagagggagggagaggtcGGGAAAAGAAAACAGCGATGGCGGCGGAGATCCACTCCAGGCCCCAGACCTCTAGACCTATCCTGCTCAATAAGATCGAGGGCCACCAGGACGCGGTGAACGCTGCCGTTCTGATCCCTAAGGAGGACGGAGTGATCACGGTCAGCGAGGACCGAACCATTCGAGTATGGCTGAAGAGAGATAGTGGACAGTACTGGCCCAGCATTTACCACACTGTGTCATCTCCATGCTCTTGCATGTCATACCACCATGAAAGCAGACGAATCTTCATAGGCCAGGACAATGGAGCTATTGTTGAGTTCCTCATCTCTGAAGATTTTAACAAGATGAACCAcGTAAGTGATACATATCCAGCTCATCAGGGCCGGGTGTCGGACATGGTGTTCTCCTTGCAGAGTCAGTGGGTGGTGAGTACAGGGCACGACAAGAGTGTGAGCTGGATGTGCACTCAGAGCGGCTCCATGCTGGGACGTCACAACTTCAGCTCCTGGGCCTCCTGTCTGCAGTATGACAATGATACCCAGCATGCATTTGTGGGTGATTACTCTGGTCAGATCACTCTGCTTAAACTGGAGGCGCAGACATATTCCACCATCACCACTCTGAAGGGACATGAAGgcAGTATAGCAGCTCTGTGGTGGGACCCTGTACAGAGATGGCTCTTCTCTGGAGCGTCGGACCACAGTGTGATTATGTGGGACATCGGTGGGAGAAAGGGTCGGACGCTGTTATTGCAGGGGCATCAtGAGAAGGTTCAGGCGTTGCGGTATCTGAATCTCACCAGGCAGCTGGTCTCATGTTCTGCTGATGGAGCTATTACAGTGTGGAACATGGACACACAGCGTGAAGAGGCTCCTCAGTGGTTGGACAGTGACTCGTGTCAGAAGTGCGAACAGCCGTTTTTTTGGAACATAAAGCAGATGTGGGACACAAAGACTCTGGGTCTCAGACAGCACCACTGCCGGAAGTGCGGTAAGGCCATTTGTGGGAAGTGTAGTTCTAAACGCTCAACATACCCGGTCATGGGCTTTGAGTTCCAGGTGCGAATGTGTGATGACTGCTACAACACAATCAAAGAGGAAGAtcGGACACCCTTGGCTACATTCCATGAGGGGAAGCACAACATATCCCACATGGACATGGACCCAACCAGAGGCGTCATGGTCACCTGTGGAAGTGACCGCGTTGTTAAgATCTGGGACATGATGCAGGTTATCGGCTGCAGTATAGCAACAGGCTTCTCTCGCTGAGGGATTGGACCTGACATTtctgaagctccgcccacacACTTCACCCACAGGGAAGCCCCACCCTCTAACCTGAGTCCTACCACTTTTCTCCCTGCAGTTCTTTTCCTGATTTGAGCTGTGTGTacgagtatgtgtgtgtgtgtgtgtgtttgggggggggggtgcagtAAATGAGTGATGTATCAGGAAGGCTGTTTGTATCCGTGACCGTTGTATTTATCAGCCACAGGATCTAATTTTCTGTGTAATCAGACATAAACTGAAGGTATtttttaaggtgtgtgtgtgtctgtgcgtggCTTTTGACACAGGTTCCTGTTGTAACATGCATGACAAATTTCATCTTATTctatatgtaatttttttgtctctttctgtctctgactcTCGCCTCTCTCGCCTTATACACGTCTCGACTCAGGGAAAGCGCACCGCAGTGTAATGAAGCAGCGCAAGGATTTGGCCCTAATAGCGGTTACCAATTTAGGTCtagcgtctctctctctgtttcagtaACAGAGAACAGAGTGGTGGTCACGACCCATGATGTATTTACGGCCAAATTCATATATTTTGGACTGTTCTTTCGATTTATAGTTTGAAAACaaattcaaaaaataaatattattgtgaGATTCATATATAATGATTTAAATCTATTTCTATTTTCCATGGATTTTTCAAAAGTCAATATTGTTGGAAACTTAATGTGAAATGTAATTTTTGAAATTTACTGAAAATTGCATGAATTGTTGGGAAATTCATAATAACATATTTTggtgaattaataaatataattgctaTTGCAAAATTAATATTGGGAAATTCGTGGtaaattgaattatttttttaatttaaggaaAATCTATTTATTGTCAAATAATCTATtggaaaatattattattgacaATGtcacataattatttttattgttggaATATCAAAATTCATGGAATCATAAATTACTGTTAAAAGATTCAAGAAAATCGAATTATTGTTGGACAATTTgtggaaaatgtaattattgtagCAAAATGAATTGAAAATTGAAGgaacattaaatatgtatttagtaGTTTAGGGACTTTTAAACTGAACCTTCTTTTAAACTCTCACAAAAATATGTAAAGTAGTCACTAGCTTCACACACTCTAAAATCGGGGGGTTCAATTCTCCATCTAGGCGAGAGCACCAGTTCTGTACTGTTTGAGGGGCATTGGGCAAATAAAATTTGCTTagagtttattaaacaaaatatttcaatatttatatactatatttctATTACATTATTACTCATTTGCTCCAGTTAAAGGTTATCACCTCTCTTTTGTAGACAGATTATAGTCTTACATGACCAGTTCATCGTATTATCTGCTGCAGTTAGGTTACTGATTATCGAATATTGCATCTGGCCTGAAGGTCTGTGTCGATGTGTTGGTACGGTCATTAAATTAAGGGCAGGTTTTGATGGATTAGTAATGGTAAAAGTCATGATGGAGATTATGGGGGATCGGATTGTGGGTGGATTTGGACGTTTTTGGAAGCTCTGGAAAGACCACATGCTTAGTGCTTTTTCTTGCCTGATCTGTTAACACTACACTTAAACATCTCTACCCATCTCACCTCTTCACTTTATTTCTCCTTCTTTCTGGTTGTGCAGTCTGTGTGTCACTGTGTTTTAACCCCTTGAACCTGAGGGGTGGCTATTACAAGCATTAGTGGCATAAGAATGAATTAACTCCTGTATTCATCAGTGATTCTACACGTACTGtccatcttatcagctccacttATCATATAGAACACTTTGTAGTTCAATTGAAGTAATTACAGACAGTAGTCTTACAGCCTACATACTATTATTaccctcctttcaccctgttttttaatactcaGAACtccacaggagagagaaaaccatcacagagcagctattattattatttgggtgttgGGTGGTTTATTCTCAggactgcagtgattagcactgataagcatggtggtggtgtatgaggtgtgtgttgtgctggtaaagttgagtggatcagatacagcagtgctgctggcgTTCTtgaacacctcagtgtcactgctgcacTGAGAATTGACCACCCACCAGAAATATCCAACCAGcagctaggtaggagtgtcttaAGAGTGGACAGtgttagaaaatgtgtttttagaatttttgtaaattatttaatcaGATAAATCTAATTAGAACCGATTTGATTCTATGATTCATTGAATCTTCATTAATTCAAATGATTTGGGCAGATTGCTACTTGTAGTTTCTGAATGATAAGTCATGGGGTTCAAGGGGTTAAgctcctttctgttttctgttttctttattaagATTTGTCCTGttttgcactctctctctctcgtacgtgtgtgcgtgcgtgcgtgcgtgtgtgtgtgtggtaaataAGTAAGTGATTTTTCTAAAACCAGTCCCTGAGAAAGCGAAGCACTAGCCTTACACAAGGCCTCACGTTGGCACTCTACGTTTGCTTATAGATTCCATCTTCATTCCACAAGACTGAGATTAATATTCACACattaacagtttctttttttttcttgtctttttcttcttataAAAAGTTGCATTAAAATGGtagcattaatttttttaaagaaatgactGCACACTTCTTAATGCCACTCTTGGTCATGGATTCTCCTGAGCTAGCATGTGCTACCGAGTTAAACCAGTGGGAGGAGCCATACCATaccaagtgtgtgtttgtgtgtagataATGACCTCGCAGGATCTTCTGTTCAGTAAGAAGGTTGAGAAggttgcagtgctgagaaacaCTTttaagaaggatttttttttttttgttagggtGGTGGAAGTTTGTCCAGTTCGGTTTACAATAGACTTTAAAGTCATTCTCGTCTTTTTCCCACTGCTTTGATCGGACAGAGAACTGGGGCTGAACTGTAGGAAGTTTGTTCTGAACTTTATGTAATGTGTAAACTACATTAAATGATGTAAATTGTGTTATTTGCTGTTTGAAAATGTCCTTTTAAATGGAACAAATTCATTAAGGCCCTCACACACCGGACACTGAAatcctctaaaaaaaaaaaaaaaaaaaaaaaaa

Function

symbol description
wdfy1 Predicted to enable metal ion binding activity. Predicted to be located in early endosome. Orthologous to human WDFY1 (WD repeat and FYVE domain containing 1).

NR:

description
PREDICTED: WD repeat and FYVE domain-containing protein 1-like

GO: NA

KEGG:

id description
K23299 WDFY1; WD repeat and FYVE domain-containing protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
TU1713 False 359 TUCP 0.56 4 3900883 3909663
XM_022674974.1 True 4407 mRNA 0.41 13 3882370 3909671

Neighbor

gene id symbol gene type direction distance location
ap1s3 NA coding downstream 33044 3838869 ~ 3849326 (-)
LOC103032017 LOC108441573,LOC107693752 coding downstream 215966 3604186 ~ 3666404 (-)
LOC103032346 NA coding downstream 328181 3516624 ~ 3554189 (-)
LOC103028436 NA coding downstream 379077 3490872 ~ 3503293 (-)
LOC103033290 NA coding downstream 499248 3376610 ~ 3383122 (-)
serpine2 NA coding upstream 17429 3927100 ~ 3957131 (-)
LOC103026864 LOC107669897 coding upstream 59549 3969220 ~ 4005230 (-)
LOC111193700 NA coding upstream 124785 4034456 ~ 4037520 (-)
LOC111193716 NA coding upstream 142816 4052487 ~ 4052783 (-)
med29 med29 coding upstream 212447 4122118 ~ 4127226 (-)
G1267 NA non-coding downstream 639 3879564 ~ 3881731 (-)
G1247 NA non-coding downstream 231992 3618232 ~ 3650378 (-)
G1234 NA non-coding downstream 282639 3595743 ~ 3599731 (-)
G1238 NA non-coding downstream 296830 3578229 ~ 3585540 (-)
G1224 NA non-coding downstream 407506 3474189 ~ 3474864 (-)
G1290 NA non-coding upstream 96491 4006162 ~ 4009880 (-)
G1301 NA non-coding upstream 169866 4079537 ~ 4081783 (-)
G1323 NA non-coding upstream 246930 4156601 ~ 4156840 (-)
G1324 NA non-coding upstream 251808 4161479 ~ 4161873 (-)
G1353 NA non-coding upstream 366167 4275838 ~ 4276794 (-)
LOC103029371 agl,LOC108441576,LOC107722579 other downstream 436984 3394204 ~ 3445386 (-)
LOC103032016 arpc5b,arpc5,LOC103032016,LOC108431159,LOC104921830,LOC107698380,LOC107599090,LOC103045524 other downstream 912030 2910754 ~ 2970340 (-)
G807 NA other downstream 1281859 2550216 ~ 2600511 (-)
znf414 NA other downstream 1447969 2423713 ~ 2434401 (-)
gtf2b tf2b,gtf2b,LOC107585659,LOC107693714,LOC107718116,LOC107691461 other downstream 1954115 1920480 ~ 1928255 (-)
G1308 NA other upstream 190094 4099765 ~ 4101566 (-)
LOC111193794 LOC108442858 other upstream 357330 4267001 ~ 4271970 (-)
LOC111193783 LOC108442858 other upstream 367238 4276909 ~ 4321340 (-)
LOC103031123 LOC108411357 other upstream 1794035 5703706 ~ 5721108 (-)
nlk nlk2,nlk,LOC107682651,LOC107666197,LOC106581270 other upstream 5044206 8953877 ~ 9092112 (-)

Expression


Co-expression Network