G1290


Basic Information

Item Value
gene id G1290
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 4006162 ~ 4009880 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU1735
ccacttagcaaccacttagcaaccactaggaaaacgttagcaactgcctagcaaccacttagcaaccactttagaaacgatagcaactgcctagcaaccacttagcaacaccttagcaaccactaggaaaacgttagcaactgcctagcaaccactttagaaatgatagcaactgcctagcaaccacttaacaacatcttagcaaccacctggaaaacgttagcaactgcctagcaaccacttagcaaccatgtggaatatgttagcaactgcctagcaactgcttagcaaccactttagaaatgatagcaactgcctagcaaccagttagctacactTTAGccaccacttggaaaacgttagcaactgcttagcaacaccctagcaaccactt
>TU1740
ccgcttagcaacaccttagcaaccacctggaaaacgttaacaactgcctagcaaccgcttagtaaccactttagaaatgatcacaactacctagcaaccacttagcaacaccttagcaaccacctggaaatgTTAGCAACTTGCcaagcaaccagttagcaacactttagcaaccaccaggaaaacgttagaaactgcctagcaacagcgtagcaaccactttagaaacgatagcaactgcctagcaaccacttagccaccacttagcaaccactaggaaaacgatAGCAacggcctagcaaccacttagcaaccactttagaaatgatagcaactgcctagcaaccacttagcaaccactttagaaatgatagcaactgcctagcaaccacttagcaaccacattagtaatgatagcaactgcctagcaaccacttagcaacaccttagcaaccactaggaaaacgttagaaactgcctagcaaccactttagaaattatagcaactgcctagcaaccacttaacaacatcttagcaaccacctggaaaatgttagcaactgcctagcaaccacttagcaaccatgtggaatatgttagcaactgcctagcaactgcttagcaaccactttagaaacaatAGCAacggcctagcaaccacttagcaaccactttagaaacgatagcaactgcctagcaaccacttagcaacaccttagcaaccacctggaaaacgttagcaactgcctagcaaccacttagcaacaccttagcaacc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1735 False 394 lncRNA 0.34 2 4006162 4007028
TU1740 True 778 lncRNA 0.36 2 4007103 4009880

Neighbor

gene id symbol gene type direction distance location
LOC103026864 LOC107669897 coding downstream 932 3969220 ~ 4005230 (-)
serpine2 NA coding downstream 49031 3927100 ~ 3957131 (-)
ap1s3 NA coding downstream 156836 3838869 ~ 3849326 (-)
LOC103032017 LOC108441573,LOC107693752 coding downstream 339758 3604186 ~ 3666404 (-)
LOC103032346 NA coding downstream 451973 3516624 ~ 3554189 (-)
LOC111193700 NA coding upstream 24576 4034456 ~ 4037520 (-)
LOC111193716 NA coding upstream 42607 4052487 ~ 4052783 (-)
med29 med29 coding upstream 112238 4122118 ~ 4127226 (-)
dnhd1 NA coding upstream 139813 4149693 ~ 4207523 (-)
LOC103027148 NA coding upstream 204135 4214015 ~ 4220916 (-)
G1267 NA non-coding downstream 124431 3879564 ~ 3881731 (-)
G1247 NA non-coding downstream 355784 3618232 ~ 3650378 (-)
G1234 NA non-coding downstream 406431 3595743 ~ 3599731 (-)
G1238 NA non-coding downstream 420622 3578229 ~ 3585540 (-)
G1224 NA non-coding downstream 531298 3474189 ~ 3474864 (-)
G1301 NA non-coding upstream 69657 4079537 ~ 4081783 (-)
G1323 NA non-coding upstream 146721 4156601 ~ 4156840 (-)
G1324 NA non-coding upstream 151599 4161479 ~ 4161873 (-)
G1353 NA non-coding upstream 265958 4275838 ~ 4276794 (-)
G1363 NA non-coding upstream 344993 4354873 ~ 4355132 (-)
wdfy1 wdfy1,LOC106613124,LOC102785143,LOC103370589 other downstream 96491 3882370 ~ 3909671 (-)
LOC103029371 agl,LOC108441576,LOC107722579 other downstream 560776 3394204 ~ 3445386 (-)
LOC103032016 arpc5b,arpc5,LOC103032016,LOC108431159,LOC104921830,LOC107698380,LOC107599090,LOC103045524 other downstream 1035822 2910754 ~ 2970340 (-)
G807 NA other downstream 1405651 2550216 ~ 2600511 (-)
znf414 NA other downstream 1571761 2423713 ~ 2434401 (-)
G1308 NA other upstream 89885 4099765 ~ 4101566 (-)
LOC111193794 LOC108442858 other upstream 257121 4267001 ~ 4271970 (-)
LOC111193783 LOC108442858 other upstream 267029 4276909 ~ 4321340 (-)
LOC103031123 LOC108411357 other upstream 1693826 5703706 ~ 5721108 (-)
nlk nlk2,nlk,LOC107682651,LOC107666197,LOC106581270 other upstream 4943997 8953877 ~ 9092112 (-)

Expression


Co-expression Network