G1301


Basic Information

Item Value
gene id G1301
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 4079537 ~ 4081783 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU1759
TAGGGTGGGAGTGGCTGGGTGGTTGTGTGTTGAGAgggatgtttttcttttgttttgctttttgctcTCATGCTTTCTCTGAGAAGAAAATAAACTGGTATTTTGATAAATGTGTTGTACCTTATTTTTAATGGTTAGTAGCATATTGATACAGGACCACATTTAGAGACATGGTATTTGGTTCCCATTTCTAAACATTCTGCtgtgtattttaagcaaaaataaatgttttttattaataaactctttGTTAGCTTGAGGAATACTACAAATGGTCAAAGACCACACCACCACCCCATATAATGGATATAACCCAAACAGGTTTGTTATAAtggtaaacaaattaaattttttaaatgccTCATACACCCTGTAATACTAAATTTGACAAAGCATAAAATGCACAGTTTATATATCAACTGCTCAAGAACAAAGAACATTATTTTCTATTGATGTttgtattttacttatttatatctCCCAGTCTATCTAGATTACAGAAAGATAAACTGCTAGTTAGCCTATGCGAATTATTGTGTTCTggctctatttatttatgaatttattcattcattaattcatggTAAGCATTATAAATTGATACTTGAGCATGTAGATGTTAATCTTATCGCTAAAGGTGTAATTAAGTTAATAAAATGTGAAGTAGTTTACAGACTTggcatatgtaaaaaaaaaacaccacatacatacattttaatagattattttgtttgattttcgaaatatatttagtttaaacaCCTATCAGTCTATCTATAATTCAGAAAACGGAAGTTAAGCTTGAGCAGCGACCTCACAGAGCCGAAAACTGTTGACGCATGCGCACAACGGCTGGTGTAACAGCCGTGGCTACCTGATCTGTGCCCCTGCTCAGTTTGCAATGCGTGCGCATGCGCGGAACAAATCGGGCAGGGGGTACAGATCGGGTAGTGACACTGCTCCTGCCTTGGCCTGCAGCGGCGACATTTTTAAGCTGTTGACCCTCATTCATTTTCAGCAGTTGTTACTGCAGTAGGGGTTATAGCCGCGATGTTGCTGTGCCGTCCCTTTTGTTCTGTCTCACTGATACCGGAAGTACAGGACggtggagataaataaataaat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1759 True 1125 lncRNA 0.45 2 4079537 4081783

Neighbor

gene id symbol gene type direction distance location
LOC111193716 NA coding downstream 26754 4052487 ~ 4052783 (-)
LOC111193700 NA coding downstream 42017 4034456 ~ 4037520 (-)
LOC103026864 LOC107669897 coding downstream 74307 3969220 ~ 4005230 (-)
serpine2 NA coding downstream 122406 3927100 ~ 3957131 (-)
ap1s3 NA coding downstream 230211 3838869 ~ 3849326 (-)
med29 med29 coding upstream 40335 4122118 ~ 4127226 (-)
dnhd1 NA coding upstream 67910 4149693 ~ 4207523 (-)
LOC103027148 NA coding upstream 132232 4214015 ~ 4220916 (-)
LOC111193765 NA coding upstream 139092 4220875 ~ 4237445 (-)
LOC103028190 LOC103028190 coding upstream 253065 4334848 ~ 4338794 (-)
G1290 NA non-coding downstream 69657 4006162 ~ 4009880 (-)
G1267 NA non-coding downstream 197806 3879564 ~ 3881731 (-)
G1247 NA non-coding downstream 429159 3618232 ~ 3650378 (-)
G1234 NA non-coding downstream 479806 3595743 ~ 3599731 (-)
G1238 NA non-coding downstream 493997 3578229 ~ 3585540 (-)
G1323 NA non-coding upstream 74818 4156601 ~ 4156840 (-)
G1324 NA non-coding upstream 79696 4161479 ~ 4161873 (-)
G1353 NA non-coding upstream 194055 4275838 ~ 4276794 (-)
G1363 NA non-coding upstream 273090 4354873 ~ 4355132 (-)
G1374 NA non-coding upstream 298815 4380598 ~ 4381126 (-)
wdfy1 wdfy1,LOC106613124,LOC102785143,LOC103370589 other downstream 169866 3882370 ~ 3909671 (-)
LOC103029371 agl,LOC108441576,LOC107722579 other downstream 634151 3394204 ~ 3445386 (-)
LOC103032016 arpc5b,arpc5,LOC103032016,LOC108431159,LOC104921830,LOC107698380,LOC107599090,LOC103045524 other downstream 1109197 2910754 ~ 2970340 (-)
G807 NA other downstream 1479026 2550216 ~ 2600511 (-)
znf414 NA other downstream 1645136 2423713 ~ 2434401 (-)
G1308 NA other upstream 17982 4099765 ~ 4101566 (-)
LOC111193794 LOC108442858 other upstream 185218 4267001 ~ 4271970 (-)
LOC111193783 LOC108442858 other upstream 195126 4276909 ~ 4321340 (-)
LOC103031123 LOC108411357 other upstream 1621923 5703706 ~ 5721108 (-)
nlk nlk2,nlk,LOC107682651,LOC107666197,LOC106581270 other upstream 4872094 8953877 ~ 9092112 (-)

Expression


Co-expression Network