LOC111193783 (LOC108442858)


Basic Information

Item Value
gene id LOC111193783
gene name LOC108442858
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 4276909 ~ 4321340 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU1837
CTCCAAATTTCGCCACACTCAAACATCATCAGCTGCTATTTTCTTCCTGATTCAGCGATAGCAACAGGTGTGTGCAGTAATGAAGTTCTGGTTCCGGACCGGGTCAGCGCAGTACTAGGGAAGAATGTCACGCTAAGCTGCAGGGTGGAGGTGGGCACCAACCTCAGCCTCACCCAGAGCTCATGGGAGCGACAGTCACCCACGGGAACCACCACCCTGGCCGTGTTTAACCCTCAGTTCGGCACCTCTGTGGTGGAGGCGTATGAGAACCGAGTGCAGTTCGTCAGGCCGTCCGCGGAGGATGCCTCCATTGTCCTGCAGGGGGTCAGCTTCGCAGATATTGGGTCCTACACCTGTAAGGTGGCCACGTTTCCTCTGGGCAACTCGCAGGCCTCCACAGTGCTGGACGTGATGGtggAGCCGAAGGTGTACGTGTCGGCCGGTTCTGGTCCGTTGGTGGACGGTGACGTGGACAGTGTGGTGGCGACCTGCACGGCAGAGCGGGCCCGGCCACCCGCTGAGGTGTTCTGGGAGTCGGACCTGTTCGGCCGCTCGGAGAAGATCGACCAAGACGAGCCCAACGGCACCACCACTACGCAGGTGCGCTACATCTGGGCACCAACCAGCCACGCCTTCGGCCTCACCCTGACCTGCGTGGTGCGTCACCCGGCACTGGACATGGAGTTCCGCATTCCATATGTGCTGGACGTGCAGTTTGCTCCGGATGTGATGGTGGTGGGTCAAGATGAGGTTTGGTATGTGGGGCAGGAGAACGTCAGGCTGGACTGCAGAGCAAACGCCAACCCGTACCCCC
>XM_022675831.1
TCGGTGAGTCGGTTCTCCGCGCGCTGCGGAGTCGGTGGTGTTGGGGAATGATGGCGGTGGGTCGCGGATCTCCCCCGGGATTTACTCCGGTACCGGCGGCGCTGCGGACTGGCCTGCTGCTGCTCGCGCTTTCTGGTGTGTGCAGTAATGAAGTTCTGGTTCCGGACCGGGTCAGCGCAGTACTAGGGAAGAATGTCACGCTAAGCTGCAGGGTGGAGGTGGGCACCAACCTCAGCCTCACCCAGAGCTCATGGGAGCGACAGTCACCCACGGGAACCACCACCCTGGCCGTGTTTAACCCTCAGTTCGGCACCTCTGTGGTGGAGGCGTATGAGAACCGAGTGCAGTTCGTCAGGCCGTCCGCGGAGGATGCCTCCATTGTCCTGCAGGGGGTCAGCTTCGCAGATATTGGGTCCTACACCTGTAAGGTGGCCACGTTTCCTCTGGGCAACTCGCAGGCCTCCACAGTGCTGGACGTGATGGtggAGCCGAAGGTGTACGTGTCGGCCGGTTCTGGTCCGTTGGTGGACGGTGACGTGGACAGTGTGGTGGCGACCTGCACGGCAGAGCGGGCCCGGCCACCCGCTGAGGTGTTCTGGGAGTCGGACCTGTTCGGCCGCTCGGAGAAGATCGACCAAGACGAGCCCAACGGCACCACCACTACGCAGGTGCGCTACATCTGGGCACCAACCAGCCACGCCTTCGGCCTCACCCTGACCTGCGTGGTGCGTCACCCGGCACTGGACATGGAGTTCCGCATTCCATATGTGCTGGACGTGCAGTTTGCTCCGGATGTGATGGTGGTGGGTCAAGATGAGGTTTGGTATGTGGGGCAGGAGAACGTCAGGCTGGACTGCAGAGCAAACGCCAACCCGTACCCCCATCTCTTCCTCTGGACCAGGTAACTGCAGCGGGCAGAGCGGTCAGTTCCTGCATTGATTATCCTGCTGCTTAAAacagggggggtgggggtttcTACTGCAGCACTGTGTCTAAAACTGTAGTTTATTGTGATCTTTTCCAAAACAAGAtcagtttataatgttttttttatgatagtTGCAGTTCAGAACCAAAACAAATGGAAGAATGTCAGGATGCATCAAAACAGTTGGCAAAAAGCAGTTTTGGTGTTCAGCATTTAGTGGCAGTTTTCCAGACTAGGATTAAGCCTATTATAGGGCTGCAGTATTTAGAAAAGGTTTCCACTAAAAGGAAACTTTAGTCTAGGACGAGGCttaactcccataattcacctgcacttactatcagacctcactccaactccagaaattcacctgcacccactatcagcc

Function

NR:

description
PREDICTED: nectin-3-like protein isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1837 False 814 TUCP 0.48 4 4277343 4304762
XM_022675831.1 True 1316 mRNA 0.56 4 4276909 4321340

Neighbor

gene id symbol gene type direction distance location
LOC111193765 NA coding downstream 39464 4220875 ~ 4237445 (-)
LOC103027148 NA coding downstream 55993 4214015 ~ 4220916 (-)
dnhd1 NA coding downstream 69386 4149693 ~ 4207523 (-)
med29 med29 coding downstream 149683 4122118 ~ 4127226 (-)
LOC111193716 NA coding downstream 224126 4052487 ~ 4052783 (-)
LOC103028190 LOC103028190 coding upstream 13508 4334848 ~ 4338794 (-)
LOC111192761 NA coding upstream 65907 4387247 ~ 4388980 (-)
LOC111192762 NA coding upstream 70606 4391946 ~ 4393659 (-)
LOC107197778 NA coding upstream 413698 4735038 ~ 4747924 (-)
irs1 irs1,LOC107577679 coding upstream 584401 4905741 ~ 4943017 (-)
G1353 NA non-coding downstream 115 4275838 ~ 4276794 (-)
G1324 NA non-coding downstream 115036 4161479 ~ 4161873 (-)
G1323 NA non-coding downstream 120069 4156601 ~ 4156840 (-)
G1301 NA non-coding downstream 195126 4079537 ~ 4081783 (-)
G1290 NA non-coding downstream 267029 4006162 ~ 4009880 (-)
G1363 NA non-coding upstream 33533 4354873 ~ 4355132 (-)
G1374 NA non-coding upstream 59258 4380598 ~ 4381126 (-)
G1385 NA non-coding upstream 325441 4646781 ~ 4655868 (-)
G1399 NA non-coding upstream 361894 4683234 ~ 4683540 (-)
G1414 NA non-coding upstream 384247 4705587 ~ 4705946 (-)
LOC111193794 LOC108442858 other downstream 4939 4267001 ~ 4271970 (-)
G1308 NA other downstream 175343 4099765 ~ 4101566 (-)
wdfy1 wdfy1,LOC106613124,LOC102785143,LOC103370589 other downstream 367238 3882370 ~ 3909671 (-)
LOC103029371 agl,LOC108441576,LOC107722579 other downstream 831523 3394204 ~ 3445386 (-)
LOC103032016 arpc5b,arpc5,LOC103032016,LOC108431159,LOC104921830,LOC107698380,LOC107599090,LOC103045524 other downstream 1306569 2910754 ~ 2970340 (-)
LOC103031123 LOC108411357 other upstream 1382366 5703706 ~ 5721108 (-)
nlk nlk2,nlk,LOC107682651,LOC107666197,LOC106581270 other upstream 4632537 8953877 ~ 9092112 (-)
LOC103037880 LOC108432996 other upstream 4792139 9113479 ~ 9133571 (-)
hspa13 hspa13,LOC107682527,LOC107666191,LOC107714176 other upstream 5425282 9746622 ~ 9755755 (-)
rap1gap2 rap1gap2 other upstream 5926125 10247465 ~ 10461860 (-)

Expression


Co-expression Network