G1567


Basic Information

Item Value
gene id G1567
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 4839888 ~ 4863645 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU2133
aggtggttgctaagtggttgctaggcagttgctataatttctaaagtggttgctaggcagttgctaatgttttcctagtggctgttaaggtgttgctaagtggttgctaggcagttgctatcgtttttaacgtggttgctaagtggttgctaagcagttgctttcatttctaaagtggttgctaagctgttgctaggcagatcCTAACGttttcctggtggttgctaaggtgttgctaactggttgctaggcagttgctataatttttaaagtggttgctaagtggttgctaggcagttgctaacgttttccaggtggttgctaaggtggttgctaagcagttaataggtggttgctaaaacctggctggggtgccggggtgtccaaacttttgactgatagctgctccatacagcagctcctccatacactcacagtactggaggagcaggggagagaaggggttccgtgcgcagagctgctcgtgtgcgagatggaactctgggccccccattcatttctatggggAAACTTCGTACGATAATTGTACGAAAACCGTACGACATATAATTTCGTGAAGCATATTTTCGGAAAGAACGCGATACGTTCTATAAACCAGCCGAATTTCGTCTTCGTATCTTGAAAATTGTGACGTACACGAGCTTTCGAATTTctccccattcattttcaatgggaaaaATTTCGTAcatttacgaagtttttacgaaaaccgtacgaTATATCGcttcaaaaagcacaagcaactTAAGTTGGCATAGGTTCTACGATCCCTGAAAATTTCGTGACTGTACCATAAAAGCTGTAGGAGGAGTAGCGTTGCAAAAAACATGGCgagaataataagaataagaagattacgaagaacaataagttggcttttccaagccaacttaataataataataataataataataaa
>TU2134
ATAAAACTAGAAAAGGTAAagttcgtgaacgaactttaagttggcttggaaaagaacgctaataacgttaaaaagttaaaatggttgctaagcttTTTCCgtctgaagagtgtgaagagtcATTGATATGCTGTTAACGCTAAATGCtaaaaacgctgaaatctaaaaacatttggttaaacgctgaaatctaaaaacatttggttaaacgctgaaatctaaaaacgtttggttaaaagatgaaatctaaaaacatttggttaaacactgaaatctaaaaacgtttgattaaacgctgaaatctaaaaacgtttggttaaacgctgaaatctaaaaacgcttgtttaaatgctgaaatcgtaaaacttttggttaaacttttgattgctaatgtgttgctaggcggttgctatcatttctgaaaaggttgctaagctgttgctaggcaattgctaatgttttccaggtggttgctaagctgttgctaactggttgctaggcaattgcTAACATAtaacaggtggttgctaagtggttgctaagtggttgctaggcagttgctaacgttttccaggtggttgctaaggtggttgctaagcagttaataggtggttgctaaaacctggctggggtgccggggtgtccaaacttttgactgatagctgctccatacagcagctcctccatacactcacagtactggaggagcaggggagagaaggggttccgtgcgcagagctgctcgtgtgcgagatggaactctgggccccccattcatttctatggggAAACTTCGTACGATAATTGTACGAAAACCGTACGACATATAATTTCGTGAAGCATATTTTCGGAAAGAACGCGATACGTTCTATAAACCAGCCGAATTTCGTCTTCGTATCTTGAAAATTGTGACGTACACGAGCTTTCGAATTTctccccattcattttcaatgggaaaaATTTCGTAcatttacgaagtttttacgaaaaccgtacgaTATATCGcttcaaaaagcacaagcaactTAAGTTGGCATAGGTTCTACGATCCCTGAAAATTTCGTGACTGTACCATAAAAGCTGTAGGAGGAGTAGCGTTGCAAAAAACATGGCgagaataataagaataagaagattacgaagaacaataagttggcttttccaagccaacttaataataataataataataataataaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2133 False 940 lncRNA 0.41 3 4839888 4861114
TU2134 True 1200 lncRNA 0.45 3 4839888 4863645

Neighbor

gene id symbol gene type direction distance location
LOC107197778 NA coding downstream 91964 4735038 ~ 4747924 (-)
LOC111192762 NA coding downstream 446229 4391946 ~ 4393659 (-)
LOC111192761 NA coding downstream 450908 4387247 ~ 4388980 (-)
LOC103028190 LOC103028190 coding downstream 501094 4334848 ~ 4338794 (-)
LOC111193765 NA coding downstream 602443 4220875 ~ 4237445 (-)
irs1 irs1,LOC107577679 coding upstream 42096 4905741 ~ 4943017 (-)
LOC103027032 NA coding upstream 109901 4973546 ~ 5101897 (-)
fbxo46 fbxo46,si:dkey-114g7.4,LOC107672409,LOC107561382 coding upstream 458968 5322613 ~ 5331630 (-)
LOC103027738 si:ch211-11n16.2,LOC108442869,LOC108278225,LOC107678255,LOC107749652,LOC107561380,LOC105909327,LOC107758522 coding upstream 605589 5469234 ~ 5489576 (-)
LOC103031434 NA coding upstream 794146 5657791 ~ 5664289 (-)
G1444 NA non-coding downstream 83349 4755927 ~ 4756539 (-)
G1425 NA non-coding downstream 106005 4733637 ~ 4733883 (-)
G1421 NA non-coding downstream 122446 4717133 ~ 4717442 (-)
G1414 NA non-coding downstream 133942 4705587 ~ 4705946 (-)
G1399 NA non-coding downstream 156348 4683234 ~ 4683540 (-)
G1575 NA non-coding upstream 183 4863828 ~ 4864129 (-)
G1581 NA non-coding upstream 24413 4888058 ~ 4889245 (-)
G1603 NA non-coding upstream 163733 5027378 ~ 5028012 (-)
G1616 NA non-coding upstream 252267 5115912 ~ 5116497 (-)
G1621 NA non-coding upstream 306187 5169832 ~ 5171251 (-)
LOC111193783 LOC108442858 other downstream 518548 4276909 ~ 4321340 (-)
LOC111193794 LOC108442858 other downstream 567918 4267001 ~ 4271970 (-)
G1308 NA other downstream 738322 4099765 ~ 4101566 (-)
wdfy1 wdfy1,LOC106613124,LOC102785143,LOC103370589 other downstream 930217 3882370 ~ 3909671 (-)
LOC103029371 agl,LOC108441576,LOC107722579 other downstream 1394502 3394204 ~ 3445386 (-)
LOC103031123 LOC108411357 other upstream 840061 5703706 ~ 5721108 (-)
nlk nlk2,nlk,LOC107682651,LOC107666197,LOC106581270 other upstream 4090232 8953877 ~ 9092112 (-)
LOC103037880 LOC108432996 other upstream 4249834 9113479 ~ 9133571 (-)
hspa13 hspa13,LOC107682527,LOC107666191,LOC107714176 other upstream 4882977 9746622 ~ 9755755 (-)
rap1gap2 rap1gap2 other upstream 5383820 10247465 ~ 10461860 (-)

Expression


Co-expression Network