G2447


Basic Information

Item Value
gene id G2447
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 9213636 ~ 9213948 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU3241
aaGAAAATCCTCCCATCACGgagttttacactaaaagatcgctgattcgctcatttcgctgtcaatcaaaaatggactccgcctcagacagatcatccaatcatcatgcagaagctgagcgtccgggccggccgaggccagcccactgccccatagacccccagagacgctgagcgtccgatgggcgggacaaagcccagcatttatccaatgactcgtctcgtttcgccgcgcgctttgctccgcttttgaagtctgtgcactgtttaaagcagcgctgtgaagctgcgggaatgagtgagaggaaagccac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU3241 True 313 lncRNA 0.47 1 9213636 9213948

Neighbor

gene id symbol gene type direction distance location
LOC103031688 nos2,LOC108432969 coding downstream 280526 8911820 ~ 8933110 (-)
LOC103026958 nos2,LOC108432969 coding downstream 323177 8867321 ~ 8890459 (-)
mrps23 NA coding downstream 350846 8857326 ~ 8862790 (-)
LOC103023547 LOC108432992,LOC103353587,LOC100691215,LOC108277929,LOC102314497 coding downstream 426587 8726331 ~ 8787049 (-)
LOC103024281 NA coding downstream 491026 8701197 ~ 8722610 (-)
LOC103039097 serpinh1b,LOC103039097,LOC108433001,LOC108278262,LOC107588392,LOC107756564,LOC107666206 coding upstream 392968 9606916 ~ 9612718 (-)
LOC103040232 samsn1 coding upstream 552092 9766040 ~ 9802680 (-)
LOC103040551 NA coding upstream 598394 9812342 ~ 9814698 (-)
LOC103040855 NA coding upstream 603714 9817662 ~ 9819909 (-)
LOC111195496 tekt1 coding upstream 1295092 10509040 ~ 10512788 (-)
G2429 NA non-coding downstream 266400 8946340 ~ 8947236 (-)
G2329 NA non-coding downstream 582838 8629822 ~ 8630798 (-)
G2327 NA non-coding downstream 585733 8627692 ~ 8627903 (-)
G2324 NA non-coding downstream 590003 8623402 ~ 8623633 (-)
G2313 NA non-coding downstream 629645 8583783 ~ 8583991 (-)
G2450 NA non-coding upstream 38136 9252084 ~ 9252292 (-)
G2451 NA non-coding upstream 65279 9279227 ~ 9279495 (-)
G2454 NA non-coding upstream 101738 9315686 ~ 9315890 (-)
G2477 NA non-coding upstream 250144 9464092 ~ 9465481 (-)
G2479 NA non-coding upstream 257145 9471093 ~ 9471317 (-)
LOC103037880 LOC108432996 other downstream 80065 9113479 ~ 9133571 (-)
nlk nlk2,nlk,LOC107682651,LOC107666197,LOC106581270 other downstream 121524 8953877 ~ 9092112 (-)
LOC103031123 LOC108411357 other downstream 3492528 5703706 ~ 5721108 (-)
LOC111193783 LOC108442858 other downstream 4892296 4276909 ~ 4321340 (-)
LOC111193794 LOC108442858 other downstream 4941666 4267001 ~ 4271970 (-)
hspa13 hspa13,LOC107682527,LOC107666191,LOC107714176 other upstream 532674 9746622 ~ 9755755 (-)
rap1gap2 rap1gap2 other upstream 1033517 10247465 ~ 10461860 (-)
G2783 NA other upstream 1368341 10582289 ~ 10582747 (-)
LOC103025442 lhx1a,LOC108427001,LOC108277614,LOC107743643,LOC105897175,LOC107669762,LOC107589700 other upstream 1440910 10654858 ~ 10684465 (-)
sarm1 sarm1,LOC107669752,LOC107743642,LOC107756984,LOC107685076 other upstream 2067261 11281209 ~ 11293882 (-)

Expression


Co-expression Network