G2516


Basic Information

Item Value
gene id G2516
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 9624501 ~ 9624720 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU3323
caccatcatcaaaacctcatcccaactgcgAAACATGGTGaaggggcatcatggtttggggctgctttcccaagtttaccaagacactTTGCAGGACAACTTTAGACCATGActgccaactgaagctcaacagaggatggatgatgcaacaggacaacgacccaaaacataaaagtaaatcaacaaccgaatggcttcaacagtagaaaatacgccttct

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU3323 True 220 lncRNA 0.51 1 9624501 9624720

Neighbor

gene id symbol gene type direction distance location
LOC103039097 serpinh1b,LOC103039097,LOC108433001,LOC108278262,LOC107588392,LOC107756564,LOC107666206 coding downstream 11783 9606916 ~ 9612718 (-)
LOC103031688 nos2,LOC108432969 coding downstream 691391 8911820 ~ 8933110 (-)
LOC103026958 nos2,LOC108432969 coding downstream 734042 8867321 ~ 8890459 (-)
mrps23 NA coding downstream 761711 8857326 ~ 8862790 (-)
LOC103023547 LOC108432992,LOC103353587,LOC100691215,LOC108277929,LOC102314497 coding downstream 837452 8726331 ~ 8787049 (-)
LOC103040232 samsn1 coding upstream 141320 9766040 ~ 9802680 (-)
LOC103040551 NA coding upstream 187622 9812342 ~ 9814698 (-)
LOC103040855 NA coding upstream 192942 9817662 ~ 9819909 (-)
LOC111195496 tekt1 coding upstream 884320 10509040 ~ 10512788 (-)
LOC111195508 NA coding upstream 1128384 10753104 ~ 10756886 (-)
G2479 NA non-coding downstream 153184 9471093 ~ 9471317 (-)
G2477 NA non-coding downstream 159020 9464092 ~ 9465481 (-)
G2454 NA non-coding downstream 308611 9315686 ~ 9315890 (-)
G2451 NA non-coding downstream 345006 9279227 ~ 9279495 (-)
G2450 NA non-coding downstream 372209 9252084 ~ 9252292 (-)
G2519 gdpd5b,LOC103039705,LOC108433002,LOC105901430 non-coding upstream 9437 9634157 ~ 9710523 (-)
G2677 NA non-coding upstream 161799 9786519 ~ 9787048 (-)
G2678 NA non-coding upstream 184526 9809246 ~ 9819997 (-)
G2679 NA non-coding upstream 222407 9847127 ~ 9847841 (-)
G2689 NA non-coding upstream 414831 10039551 ~ 10101485 (-)
LOC103037880 LOC108432996 other downstream 490930 9113479 ~ 9133571 (-)
nlk nlk2,nlk,LOC107682651,LOC107666197,LOC106581270 other downstream 532389 8953877 ~ 9092112 (-)
LOC103031123 LOC108411357 other downstream 3903393 5703706 ~ 5721108 (-)
LOC111193783 LOC108442858 other downstream 5303161 4276909 ~ 4321340 (-)
LOC111193794 LOC108442858 other downstream 5352531 4267001 ~ 4271970 (-)
hspa13 hspa13,LOC107682527,LOC107666191,LOC107714176 other upstream 121902 9746622 ~ 9755755 (-)
rap1gap2 rap1gap2 other upstream 622745 10247465 ~ 10461860 (-)
G2783 NA other upstream 957569 10582289 ~ 10582747 (-)
LOC103025442 lhx1a,LOC108427001,LOC108277614,LOC107743643,LOC105897175,LOC107669762,LOC107589700 other upstream 1030138 10654858 ~ 10684465 (-)
sarm1 sarm1,LOC107669752,LOC107743642,LOC107756984,LOC107685076 other upstream 1656489 11281209 ~ 11293882 (-)

Expression


Co-expression Network