G2677


Basic Information

Item Value
gene id G2677
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 9786519 ~ 9787048 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU3507
gtcagggccagacaggaatgagactggtgcagatacaataaaataacttttattaaagttatagagtagacaggggtagtcaacagaaacagggtcagtaccaaaaatgcacagtgtagagaaaccataccataaccggaggacagtccagagttcatacacggatAGGCAGTAtaacagggtaggcaaaaatccagagtacaataaacagtccaggtcatacacggtaatccaacacaagggagcaggcaaaaatcaaagtcggtagaaaacaaaaacaagatcatacacggagaatagcaagggcaagagaaacgctttgtattgtaggatttaccaaacagatactcggcgaggtgtgagcgtgagcatggtccttaaatactctgagtaatcagtactcgggacttcctggtggcgtcatgtgacgtgtcatgtgatcgggagtgtgtgttgtgtcatggagtggtgcgttctgggtattgtagttgttactgtgagaatcgcagatagagctggatgtgggagac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU3507 True 530 lncRNA 0.42 1 9786519 9787048

Neighbor

gene id symbol gene type direction distance location
LOC103039097 serpinh1b,LOC103039097,LOC108433001,LOC108278262,LOC107588392,LOC107756564,LOC107666206 coding downstream 173801 9606916 ~ 9612718 (-)
LOC103031688 nos2,LOC108432969 coding downstream 853409 8911820 ~ 8933110 (-)
LOC103026958 nos2,LOC108432969 coding downstream 896060 8867321 ~ 8890459 (-)
mrps23 NA coding downstream 923729 8857326 ~ 8862790 (-)
LOC103023547 LOC108432992,LOC103353587,LOC100691215,LOC108277929,LOC102314497 coding downstream 999470 8726331 ~ 8787049 (-)
LOC103040551 NA coding upstream 25294 9812342 ~ 9814698 (-)
LOC103040855 NA coding upstream 30614 9817662 ~ 9819909 (-)
LOC111195496 tekt1 coding upstream 721992 10509040 ~ 10512788 (-)
LOC111195508 NA coding upstream 966056 10753104 ~ 10756886 (-)
LOC103043674 dhr13,LOC108427000,LOC107685074,LOC107589701,LOC107756995 coding upstream 1285350 11072398 ~ 11076365 (-)
G2519 gdpd5b,LOC103039705,LOC108433002,LOC105901430 non-coding downstream 75996 9634157 ~ 9710523 (-)
G2516 NA non-coding downstream 161799 9624501 ~ 9624720 (-)
G2479 NA non-coding downstream 315202 9471093 ~ 9471317 (-)
G2477 NA non-coding downstream 321038 9464092 ~ 9465481 (-)
G2454 NA non-coding downstream 470629 9315686 ~ 9315890 (-)
G2678 NA non-coding upstream 22198 9809246 ~ 9819997 (-)
G2679 NA non-coding upstream 60079 9847127 ~ 9847841 (-)
G2689 NA non-coding upstream 252503 10039551 ~ 10101485 (-)
G2696 NA non-coding upstream 333503 10120551 ~ 10122688 (-)
G2712 NA non-coding upstream 411099 10198147 ~ 10284400 (-)
hspa13 hspa13,LOC107682527,LOC107666191,LOC107714176 other downstream 30764 9746622 ~ 9755755 (-)
LOC103037880 LOC108432996 other downstream 652948 9113479 ~ 9133571 (-)
nlk nlk2,nlk,LOC107682651,LOC107666197,LOC106581270 other downstream 694407 8953877 ~ 9092112 (-)
LOC103031123 LOC108411357 other downstream 4065411 5703706 ~ 5721108 (-)
LOC111193783 LOC108442858 other downstream 5465179 4276909 ~ 4321340 (-)
rap1gap2 rap1gap2 other upstream 460417 10247465 ~ 10461860 (-)
G2783 NA other upstream 795241 10582289 ~ 10582747 (-)
LOC103025442 lhx1a,LOC108427001,LOC108277614,LOC107743643,LOC105897175,LOC107669762,LOC107589700 other upstream 867810 10654858 ~ 10684465 (-)
sarm1 sarm1,LOC107669752,LOC107743642,LOC107756984,LOC107685076 other upstream 1494161 11281209 ~ 11293882 (-)
LOC111192956 LOC108412924,LOC108444125,LOC108444119,LOC108416439 other upstream 2136954 11924002 ~ 11940744 (-)

Expression


Co-expression Network