G2679


Basic Information

Item Value
gene id G2679
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 9847127 ~ 9847841 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU3516
tctgatcagctggaATGTACAGACCGTCTGACTGATGGTAATGttactatgagagcagcagctgtgagccgcacCAGCCAAACAACACgcccacccagcagagcagcgagaggtaccgtTACCGAAAATCTAGATAAATTAGATAAtttaaagataacatagctagcgttagctacttagctagctatcttattctagctagccaacgctagctaactagctaacactaactagatgaagctaagtacccagtaagcattctaacttctaaactgaacggtttatcaaccaaacagcgcctggatgtttcaatatccacttaaatcatgttcgtttcattcagtcttaatgaactctggactttgcatgttaaatagctaaatgtatataaaatagctggttaactggatggcagtacctgctgtggacgcgctgcagggttctgcacggctccacgtagagagagagaataaacactcccCAAACCcctcgctctcagaaaagcatctaaaaagttctgctcaggtttatataggaaagatctctgagtaaatgctccatgttagcctagttcagcttcgtcttcatccataatctcgacAAACAATACGCTcttttcctctagctatatgcctgggatcttaaaccaaccaacctcgtgacgtcaccagtgctgcacgggcaacatggcggcgccctagctcaaacgtaacaa

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process

KEGG:

id description
ko00140 Steroid hormone biosynthesis
ko00830 Retinol metabolism
ko00980 Metabolism of xenobiotics by cytochrome P450
ko00982 Drug metabolism - cytochrome P450
ko05204 Chemical carcinogenesis - DNA adducts

RNA

RNA id representative length rna type GC content exon number start site end site
TU3516 True 715 lncRNA 0.46 1 9847127 9847841

Neighbor

gene id symbol gene type direction distance location
LOC103040855 NA coding downstream 27218 9817662 ~ 9819909 (-)
LOC103040551 NA coding downstream 32429 9812342 ~ 9814698 (-)
LOC103040232 samsn1 coding downstream 44447 9766040 ~ 9802680 (-)
LOC103039097 serpinh1b,LOC103039097,LOC108433001,LOC108278262,LOC107588392,LOC107756564,LOC107666206 coding downstream 234409 9606916 ~ 9612718 (-)
LOC103031688 nos2,LOC108432969 coding downstream 914017 8911820 ~ 8933110 (-)
LOC111195496 tekt1 coding upstream 661199 10509040 ~ 10512788 (-)
LOC111195508 NA coding upstream 905263 10753104 ~ 10756886 (-)
LOC103043674 dhr13,LOC108427000,LOC107685074,LOC107589701,LOC107756995 coding upstream 1224557 11072398 ~ 11076365 (-)
LOC103042223 cryba1a,LOC103042223,LOC108426912,LOC107743738,LOC108278232,LOC105898204 coding upstream 1233007 11080848 ~ 11083883 (-)
foxn1 foxn1 coding upstream 1272966 11120807 ~ 11135302 (-)
G2678 NA non-coding downstream 27130 9809246 ~ 9819997 (-)
G2677 NA non-coding downstream 60079 9786519 ~ 9787048 (-)
G2519 gdpd5b,LOC103039705,LOC108433002,LOC105901430 non-coding downstream 136604 9634157 ~ 9710523 (-)
G2516 NA non-coding downstream 222407 9624501 ~ 9624720 (-)
G2479 NA non-coding downstream 375810 9471093 ~ 9471317 (-)
G2689 NA non-coding upstream 191710 10039551 ~ 10101485 (-)
G2696 NA non-coding upstream 272710 10120551 ~ 10122688 (-)
G2712 NA non-coding upstream 350306 10198147 ~ 10284400 (-)
G2720 NA non-coding upstream 369870 10217711 ~ 10244181 (-)
G2730 NA non-coding upstream 423689 10271530 ~ 10272525 (-)
hspa13 hspa13,LOC107682527,LOC107666191,LOC107714176 other downstream 91372 9746622 ~ 9755755 (-)
LOC103037880 LOC108432996 other downstream 713556 9113479 ~ 9133571 (-)
nlk nlk2,nlk,LOC107682651,LOC107666197,LOC106581270 other downstream 755015 8953877 ~ 9092112 (-)
LOC103031123 LOC108411357 other downstream 4126019 5703706 ~ 5721108 (-)
LOC111193783 LOC108442858 other downstream 5525787 4276909 ~ 4321340 (-)
rap1gap2 rap1gap2 other upstream 399624 10247465 ~ 10461860 (-)
G2783 NA other upstream 734448 10582289 ~ 10582747 (-)
LOC103025442 lhx1a,LOC108427001,LOC108277614,LOC107743643,LOC105897175,LOC107669762,LOC107589700 other upstream 807017 10654858 ~ 10684465 (-)
sarm1 sarm1,LOC107669752,LOC107743642,LOC107756984,LOC107685076 other upstream 1433368 11281209 ~ 11293882 (-)
LOC111192956 LOC108412924,LOC108444125,LOC108444119,LOC108416439 other upstream 2076161 11924002 ~ 11940744 (-)

Expression


Co-expression Network