G2783


Basic Information

Item Value
gene id G2783
gene name NA
gene type unknown
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 10582289 ~ 10582747 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU3640
tacaacctggcctccaggagccatctctgctcttcaggactgttttgagcacactgactgggacatgttcagagaagctgctacttctgatgactccatcaacctggaggagtacacagactcagtgactggctacatcagcaagtgcattgaggatgttactgtctccaaaaccatcacatcccgccccaaccagaagccgtggatgactgcagaggtgcgtgtgctgctgagatcccgagacaaggcctttaagtcaggggacagggctggcctccgaacagctagagccaagctctcccgggggatcagagaggcaaagcgcacctacgcaaagaaaatccacgcccacttccaggacactactgacactcggcgcatgtggcagggcatccagaccatcaccaactacaagtcaccctcccctgcttgtaacagtgatgcctcccttccagatgc

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description
ko00310 Lysine degradation

RNA

RNA id representative length rna type GC content exon number start site end site
TU3640 True 459 TUCP 0.36 1 10582289 10582747

Neighbor

gene id symbol gene type direction distance location
LOC111195496 tekt1 coding downstream 69501 10509040 ~ 10512788 (-)
LOC103040855 NA coding downstream 762380 9817662 ~ 9819909 (-)
LOC103040551 NA coding downstream 767591 9812342 ~ 9814698 (-)
LOC103040232 samsn1 coding downstream 779609 9766040 ~ 9802680 (-)
LOC103039097 serpinh1b,LOC103039097,LOC108433001,LOC108278262,LOC107588392,LOC107756564,LOC107666206 coding downstream 969571 9606916 ~ 9612718 (-)
LOC111195508 NA coding upstream 170357 10753104 ~ 10756886 (-)
LOC103043674 dhr13,LOC108427000,LOC107685074,LOC107589701,LOC107756995 coding upstream 489651 11072398 ~ 11076365 (-)
LOC103042223 cryba1a,LOC103042223,LOC108426912,LOC107743738,LOC108278232,LOC105898204 coding upstream 498101 11080848 ~ 11083883 (-)
foxn1 foxn1 coding upstream 538060 11120807 ~ 11135302 (-)
lrrc72 NA coding upstream 721843 11304590 ~ 11308672 (-)
G2761 NA non-coding downstream 83017 10421862 ~ 10499272 (-)
G2733 NA non-coding downstream 284676 10296743 ~ 10297613 (-)
G2731 NA non-coding downstream 293607 10275904 ~ 10288682 (-)
G2712 NA non-coding downstream 297889 10198147 ~ 10284400 (-)
G2730 NA non-coding downstream 309764 10271530 ~ 10272525 (-)
G2793 NA non-coding upstream 64171 10646918 ~ 10647124 (-)
G2835 NA non-coding upstream 200401 10783148 ~ 10783487 (-)
G2837 NA non-coding upstream 201057 10783804 ~ 10784140 (-)
G2857 NA non-coding upstream 415105 10997852 ~ 10998080 (-)
G2865 NA non-coding upstream 488286 11071033 ~ 11071239 (-)
rap1gap2 rap1gap2 other downstream 120429 10247465 ~ 10461860 (-)
hspa13 hspa13,LOC107682527,LOC107666191,LOC107714176 other downstream 826534 9746622 ~ 9755755 (-)
LOC103037880 LOC108432996 other downstream 1448718 9113479 ~ 9133571 (-)
nlk nlk2,nlk,LOC107682651,LOC107666197,LOC106581270 other downstream 1490177 8953877 ~ 9092112 (-)
LOC103031123 LOC108411357 other downstream 4861181 5703706 ~ 5721108 (-)
LOC103025442 lhx1a,LOC108427001,LOC108277614,LOC107743643,LOC105897175,LOC107669762,LOC107589700 other upstream 72111 10654858 ~ 10684465 (-)
sarm1 sarm1,LOC107669752,LOC107743642,LOC107756984,LOC107685076 other upstream 698462 11281209 ~ 11293882 (-)
LOC111192956 LOC108412924,LOC108444125,LOC108444119,LOC108416439 other upstream 1341255 11924002 ~ 11940744 (-)
G3297 sacs,LOC107593479,LOC107740366,LOC107670382 other upstream 2157397 12740144 ~ 12758513 (-)
sgcg sgcg other upstream 2176319 12759066 ~ 12781165 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
striped catfish (Pangasianodon hypophthalmus) G92757 NA unknown NC_047600.1 CM018546.1 2184685 ~ 2185220 (+)