G2835


Basic Information

Item Value
gene id G2835
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 10783148 ~ 10783487 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU3701
TTTTGGACATAATTCCAAAAGGTATATTAGGCGCAAAAacaacactgctcatcaccaaaagaacagcatacctacagtgaagcatggtggtggcagcatcatactttggggctgtttttcttcagctggaACTGGGGCTTTATTCAGGGTGGATGGAATTTTGAACAGTTCCAAATACCAGTCAGTATTGGCAAAAACCTTCGGCCTTCTGGTAGAAAACTGAAAATGAAGAGGAActtcatctttcagcacaacaaTGACGCAAAGGACACATCTAAATCAACAAAAGAATGGCTTCAGCAGTATAAGATTAAGGCTTTGGAATGGCCCAGCCTgaatc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU3701 True 340 lncRNA 0.48 1 10783148 10783487

Neighbor

gene id symbol gene type direction distance location
LOC111195508 NA coding downstream 26262 10753104 ~ 10756886 (-)
LOC111195496 tekt1 coding downstream 270360 10509040 ~ 10512788 (-)
LOC103040855 NA coding downstream 963239 9817662 ~ 9819909 (-)
LOC103040551 NA coding downstream 968450 9812342 ~ 9814698 (-)
LOC103040232 samsn1 coding downstream 980468 9766040 ~ 9802680 (-)
LOC103043674 dhr13,LOC108427000,LOC107685074,LOC107589701,LOC107756995 coding upstream 288911 11072398 ~ 11076365 (-)
LOC103042223 cryba1a,LOC103042223,LOC108426912,LOC107743738,LOC108278232,LOC105898204 coding upstream 297361 11080848 ~ 11083883 (-)
foxn1 foxn1 coding upstream 337320 11120807 ~ 11135302 (-)
lrrc72 NA coding upstream 521103 11304590 ~ 11308672 (-)
arl4a arl4a,arl4aa coding upstream 926138 11709625 ~ 11713271 (-)
G2793 NA non-coding downstream 136024 10646918 ~ 10647124 (-)
G2761 NA non-coding downstream 283876 10421862 ~ 10499272 (-)
G2733 NA non-coding downstream 485535 10296743 ~ 10297613 (-)
G2731 NA non-coding downstream 494466 10275904 ~ 10288682 (-)
G2730 NA non-coding downstream 510623 10271530 ~ 10272525 (-)
G2837 NA non-coding upstream 317 10783804 ~ 10784140 (-)
G2857 NA non-coding upstream 214365 10997852 ~ 10998080 (-)
G2865 NA non-coding upstream 287546 11071033 ~ 11071239 (-)
G2881 unc119,LOC103043060 non-coding upstream 308683 11092170 ~ 11112806 (-)
G2888 NA non-coding upstream 332893 11116380 ~ 11117963 (-)
LOC103025442 lhx1a,LOC108427001,LOC108277614,LOC107743643,LOC105897175,LOC107669762,LOC107589700 other downstream 98683 10654858 ~ 10684465 (-)
G2783 NA other downstream 200401 10582289 ~ 10582747 (-)
rap1gap2 rap1gap2 other downstream 321288 10247465 ~ 10461860 (-)
hspa13 hspa13,LOC107682527,LOC107666191,LOC107714176 other downstream 1027393 9746622 ~ 9755755 (-)
LOC103037880 LOC108432996 other downstream 1649577 9113479 ~ 9133571 (-)
sarm1 sarm1,LOC107669752,LOC107743642,LOC107756984,LOC107685076 other upstream 497722 11281209 ~ 11293882 (-)
LOC111192956 LOC108412924,LOC108444125,LOC108444119,LOC108416439 other upstream 1140515 11924002 ~ 11940744 (-)
G3297 sacs,LOC107593479,LOC107740366,LOC107670382 other upstream 1956657 12740144 ~ 12758513 (-)
sgcg sgcg other upstream 1975579 12759066 ~ 12781165 (-)
LOC111197384 NA other upstream 2346725 13130212 ~ 13135641 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) G3690 NA non-coding CM030121.1 CM030121.1 21089595 ~ 21090254 (+)