G3013


Basic Information

Item Value
gene id G3013
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 11462660 ~ 11466549 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU3940
accacagataaaatattaataaatgtaaatattgctctactgcatatacagctctggaaaaaaagagaccacttaaaatggtgagtttctatgattttaccaaattgaaaacttctggaatataatcaagaggaagatggatgatcacaagccatcaaaccaagctgaactgctttaatttttgcaccaggagtggcattaagttatccaaaagcagtgtgtaagactggtggaggagaacatgccaagatgcatgaaaactgtgattaaaaaaacagggttattccactaaatattgatttctgaactcttagaactttatgaatatgatattgttttctttgcattatttgaggtctgaaagctctgcatctttattattatttcagtcatttctcattttctgcaaataaacgctctaaatgacaatattttaatttggaatttgggaaaaatcttgtccgtagtttatcgaataaaacaacaatgttcattttatccaaacataaacctataaatagcaaaaccagagaaactgattcagagatTGAATTggtctttttcttgtttttttccagagctgtatttaatacTCTGTTTAGATTAGAATATGTAATTTTGTGACTTGCACAATATACTACTTGTAGTATATGTAACCTCAGcctctgtgttttctttcttcttcatcATTTGTTGATGTCTTTCTTTAAGAGGTCTAGCATGCTCATACATGGGTTTATGTCTCTGCATGGAGGAAATAATTTcaaaaatagagagagggaactctccaataataaacaataacacaaacataaataaataaataaataaataaataaataatgagatGTGTGGACGAGGCCAAAAGGAGGAATATCtataatgtatgtataaatatactACAGCACTGCTGTAAAACACATCAGGGCCATAAATATCACTAAGAGTTAGTTAAAAGATTAAATGCTTACCTCTGTGTGGATCCAGAACTGGTAGAGCAAGTTAAACTGAATGTGAACAGCAAAGACTGACGGTGGAACTATCAAGGCCATTGGAAGATAGAACCCCATGAGGCGCACTGCTGGGTGACGGACTGTCgcagtgctgtggtcagattGTAGTACTCTGAGCTGTGATGAACTTGATGAGCAGCCCACAGAAGATTTAcct

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU3940 True 1170 lncRNA 0.36 2 11462660 11466549

Neighbor

gene id symbol gene type direction distance location
lrrc72 NA coding downstream 153988 11304590 ~ 11308672 (-)
foxn1 foxn1 coding downstream 327358 11120807 ~ 11135302 (-)
LOC103042223 cryba1a,LOC103042223,LOC108426912,LOC107743738,LOC108278232,LOC105898204 coding downstream 378777 11080848 ~ 11083883 (-)
LOC103043674 dhr13,LOC108427000,LOC107685074,LOC107589701,LOC107756995 coding downstream 386295 11072398 ~ 11076365 (-)
LOC111195508 NA coding downstream 705774 10753104 ~ 10756886 (-)
arl4a arl4a,arl4aa coding upstream 243076 11709625 ~ 11713271 (-)
LOC103024995 NA coding upstream 247572 11714121 ~ 11726198 (-)
LOC103030898 LOC108426917,LOC107588234,LOC106582211,LOC107752288,LOC107683449 coding upstream 301006 11767555 ~ 11777303 (-)
tmem106b tmem106b coding upstream 311029 11777578 ~ 11787142 (-)
LOC103031554 zgc:63694,LOC108426967,LOC107752277,LOC107699226,LOC107555275,LOC108278095,LOC107728169,LOC107592659,LOC107699183 coding upstream 479921 11946470 ~ 11976692 (-)
G3010 NA non-coding downstream 37402 11424634 ~ 11425258 (-)
G2897 NA non-coding downstream 300587 11161827 ~ 11162073 (-)
G2888 NA non-coding downstream 344697 11116380 ~ 11117963 (-)
G2881 unc119,LOC103043060 non-coding downstream 349854 11092170 ~ 11112806 (-)
G2865 NA non-coding downstream 391421 11071033 ~ 11071239 (-)
G3055 NA non-coding upstream 264966 11731515 ~ 11754015 (-)
G3062 NA non-coding upstream 288746 11755295 ~ 11760809 (-)
G3066 NA non-coding upstream 295820 11762369 ~ 11762575 (-)
G3067 NA non-coding upstream 296085 11762634 ~ 11762984 (-)
G3053 lsr non-coding upstream 324510 11791059 ~ 11797484 (-)
sarm1 sarm1,LOC107669752,LOC107743642,LOC107756984,LOC107685076 other downstream 168778 11281209 ~ 11293882 (-)
LOC103025442 lhx1a,LOC108427001,LOC108277614,LOC107743643,LOC105897175,LOC107669762,LOC107589700 other downstream 778195 10654858 ~ 10684465 (-)
G2783 NA other downstream 879913 10582289 ~ 10582747 (-)
rap1gap2 rap1gap2 other downstream 1000800 10247465 ~ 10461860 (-)
hspa13 hspa13,LOC107682527,LOC107666191,LOC107714176 other downstream 1706905 9746622 ~ 9755755 (-)
LOC111192956 LOC108412924,LOC108444125,LOC108444119,LOC108416439 other upstream 457453 11924002 ~ 11940744 (-)
G3297 sacs,LOC107593479,LOC107740366,LOC107670382 other upstream 1273595 12740144 ~ 12758513 (-)
sgcg sgcg other upstream 1292517 12759066 ~ 12781165 (-)
LOC111197384 NA other upstream 1663663 13130212 ~ 13135641 (-)
slc43a2 slc43a2,LOC107685082,LOC107548581,LOC107589710 other upstream 2077951 13544500 ~ 13572372 (-)

Expression


Co-expression Network