G3053 (lsr)


Basic Information

Item Value
gene id G3053
gene name lsr
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 11791059 ~ 11797484 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU3989
TGGATGCTGATCTTGCGACCCTGGTATTCATTTCCGAGAGTGACTGTGGTCTGCTTGGAAGCCACAATGCGTACAGTCCTGGAATCGTCAGAGCACTCAATGTTGGGGTTGTAGTTATTGTTGATTTGGGACAAGGCACTGTCTGCACCGCTGGGGTTCAAGGCAGCTTGGATTGGGTCTCTGCAGAAGGACTTGTACCTCCAGGTGACCAGAGGAGGCACTGTGGCTGTGGTAGTGTAATCACACCTAAGAGTCACAGGCTGAAATAGGATGACCACATAACGTTTTACTGGACAATTGACATTCACCCCCACAGTGAAGcCTGTTAGAGTAAAGAAAATAGCTAGGATTAAAATATGgcgcatttttaaaaataagagtcctttttaacaaaacaaaaaacactaaaataaactaaaatacccgtattaaaaaataaaaaggcacGGATGTGAAAACATGTATGGGTAGAGTCTCTCgccgtgtttttctcagacaggTAAGTCCTCCATTTTGTCTCCTCCG

Function

symbol description
lsr Acts upstream of or within endoderm development and pancreas development. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in several structures, including EVL; Kupffer's vesicle; digestive system; pronephros; and sensory system. Orthologous to human LSR (lipolysis stimulated lipoprotein receptor).

NR:

description
PREDICTED: lipolysis-stimulated lipoprotein receptor isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU3989 True 525 lncRNA 0.35 2 11791059 11797484

Neighbor

gene id symbol gene type direction distance location
tmem106b tmem106b coding downstream 3917 11777578 ~ 11787142 (-)
LOC103030898 LOC108426917,LOC107588234,LOC106582211,LOC107752288,LOC107683449 coding downstream 13756 11767555 ~ 11777303 (-)
LOC103024995 NA coding downstream 64861 11714121 ~ 11726198 (-)
arl4a arl4a,arl4aa coding downstream 77788 11709625 ~ 11713271 (-)
lrrc72 NA coding downstream 482387 11304590 ~ 11308672 (-)
LOC103031554 zgc:63694,LOC108426967,LOC107752277,LOC107699226,LOC107555275,LOC108278095,LOC107728169,LOC107592659,LOC107699183 coding upstream 148986 11946470 ~ 11976692 (-)
gbe1 gbe1,gbe1b,LOC107752276,LOC102793958 coding upstream 220531 12018015 ~ 12214741 (-)
LOC103022193 LOC107699842,LOC107592657,LOC107555278 coding upstream 818170 12615654 ~ 12626454 (-)
LOC103022701 tnfrsf19,LOC108415268,LOC103474716 coding upstream 870551 12668035 ~ 12706109 (-)
ap2s1 ap2s1 coding upstream 1355535 13153019 ~ 13165105 (-)
G3067 NA non-coding downstream 28075 11762634 ~ 11762984 (-)
G3066 NA non-coding downstream 28484 11762369 ~ 11762575 (-)
G3062 NA non-coding downstream 30250 11755295 ~ 11760809 (-)
G3055 NA non-coding downstream 37044 11731515 ~ 11754015 (-)
G3013 NA non-coding downstream 324510 11462660 ~ 11466549 (-)
G3083 NA non-coding upstream 43715 11841199 ~ 11842185 (-)
G3149 NA non-coding upstream 86821 11884305 ~ 11884699 (-)
G3150 NA non-coding upstream 90484 11887968 ~ 11889246 (-)
G3163 NA non-coding upstream 109449 11906933 ~ 11909013 (-)
G3161 NA non-coding upstream 120390 11917874 ~ 11918345 (-)
sarm1 sarm1,LOC107669752,LOC107743642,LOC107756984,LOC107685076 other downstream 497177 11281209 ~ 11293882 (-)
LOC103025442 lhx1a,LOC108427001,LOC108277614,LOC107743643,LOC105897175,LOC107669762,LOC107589700 other downstream 1106594 10654858 ~ 10684465 (-)
G2783 NA other downstream 1208312 10582289 ~ 10582747 (-)
rap1gap2 rap1gap2 other downstream 1329199 10247465 ~ 10461860 (-)
hspa13 hspa13,LOC107682527,LOC107666191,LOC107714176 other downstream 2035304 9746622 ~ 9755755 (-)
LOC111192956 LOC108412924,LOC108444125,LOC108444119,LOC108416439 other upstream 126518 11924002 ~ 11940744 (-)
G3297 sacs,LOC107593479,LOC107740366,LOC107670382 other upstream 942660 12740144 ~ 12758513 (-)
sgcg sgcg other upstream 961582 12759066 ~ 12781165 (-)
LOC111197384 NA other upstream 1332728 13130212 ~ 13135641 (-)
slc43a2 slc43a2,LOC107685082,LOC107548581,LOC107589710 other upstream 1747016 13544500 ~ 13572372 (-)

Expression


Co-expression Network