G3055


Basic Information

Item Value
gene id G3055
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 11731515 ~ 11754015 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU3991
gaagaccagcacatgtttcctccgatacatgtgaagtcagccaccgcttctttttttcgagctgctgctgatgcagcattaccgagcagccagcgcgcttggaggaaagcgcagcggctcggctccagtacatcagctcacagacgccctgtgctgcagacatccccgtgggagtgatgtggggagagagcgccatctacccacccagagggagcagggccaattttgctccctctgacgccggcagcttgatggcaaagctgcatgagctggggttcgaaccggcgacctcctgctcatagtggcagcgctttagaccgctggaccactcggcgccccaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU3991 True 342 lncRNA 0.41 2 11731515 11754015

Neighbor

gene id symbol gene type direction distance location
LOC103024995 NA coding downstream 5317 11714121 ~ 11726198 (-)
arl4a arl4a,arl4aa coding downstream 18244 11709625 ~ 11713271 (-)
lrrc72 NA coding downstream 422843 11304590 ~ 11308672 (-)
foxn1 foxn1 coding downstream 596213 11120807 ~ 11135302 (-)
LOC103042223 cryba1a,LOC103042223,LOC108426912,LOC107743738,LOC108278232,LOC105898204 coding downstream 647632 11080848 ~ 11083883 (-)
LOC103030898 LOC108426917,LOC107588234,LOC106582211,LOC107752288,LOC107683449 coding upstream 13540 11767555 ~ 11777303 (-)
tmem106b tmem106b coding upstream 23563 11777578 ~ 11787142 (-)
LOC103031554 zgc:63694,LOC108426967,LOC107752277,LOC107699226,LOC107555275,LOC108278095,LOC107728169,LOC107592659,LOC107699183 coding upstream 192455 11946470 ~ 11976692 (-)
gbe1 gbe1,gbe1b,LOC107752276,LOC102793958 coding upstream 264000 12018015 ~ 12214741 (-)
LOC103022193 LOC107699842,LOC107592657,LOC107555278 coding upstream 861639 12615654 ~ 12626454 (-)
G3013 NA non-coding downstream 264966 11462660 ~ 11466549 (-)
G3010 NA non-coding downstream 306257 11424634 ~ 11425258 (-)
G2897 NA non-coding downstream 569442 11161827 ~ 11162073 (-)
G2888 NA non-coding downstream 613552 11116380 ~ 11117963 (-)
G2881 unc119,LOC103043060 non-coding downstream 618709 11092170 ~ 11112806 (-)
G3062 NA non-coding upstream 1280 11755295 ~ 11760809 (-)
G3066 NA non-coding upstream 8354 11762369 ~ 11762575 (-)
G3067 NA non-coding upstream 8619 11762634 ~ 11762984 (-)
G3053 lsr non-coding upstream 37044 11791059 ~ 11797484 (-)
G3083 NA non-coding upstream 87184 11841199 ~ 11842185 (-)
sarm1 sarm1,LOC107669752,LOC107743642,LOC107756984,LOC107685076 other downstream 437633 11281209 ~ 11293882 (-)
LOC103025442 lhx1a,LOC108427001,LOC108277614,LOC107743643,LOC105897175,LOC107669762,LOC107589700 other downstream 1047050 10654858 ~ 10684465 (-)
G2783 NA other downstream 1148768 10582289 ~ 10582747 (-)
rap1gap2 rap1gap2 other downstream 1269655 10247465 ~ 10461860 (-)
hspa13 hspa13,LOC107682527,LOC107666191,LOC107714176 other downstream 1975760 9746622 ~ 9755755 (-)
LOC111192956 LOC108412924,LOC108444125,LOC108444119,LOC108416439 other upstream 169987 11924002 ~ 11940744 (-)
G3297 sacs,LOC107593479,LOC107740366,LOC107670382 other upstream 986129 12740144 ~ 12758513 (-)
sgcg sgcg other upstream 1005051 12759066 ~ 12781165 (-)
LOC111197384 NA other upstream 1376197 13130212 ~ 13135641 (-)
slc43a2 slc43a2,LOC107685082,LOC107548581,LOC107589710 other upstream 1790485 13544500 ~ 13572372 (-)

Expression


Co-expression Network