G3150


Basic Information

Item Value
gene id G3150
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 11887968 ~ 11889246 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU4104
ctgggcgatataacGATATCGATTTGTTTCGCGATAATTTTTCCCTCGATGACGATGATAAGCCTGTGCAATAGAATTCGATAaacattcatttccatttcccGTCTAAGTAGCGCCGCAAACGGGCGCAGCACGTGATCACGCTGAACTGCATGCTCAGCCAAGTACCactggggctggatctgatccaagtCAGCTGACCAACGAAAACACAAAACGTGTAACCAATCCAGAGGACgctggagcaaattaataaatagttaagaaaattgtaatatcaCGCAGTTATTCTCATGCATGCAACAAAAAACCCTAAAGAAAAGTGGAGTATTGACCAACACACGCAAACAACGATAGTGTTTGGACTGTGGGAATAAACGGCCGGACTGTTCAGCgcgttttaaatacattttaagtaaattttaagcactaaatgtaattaattcaatttatattaggaccgcggggcaggtgcggcaaaaatgtgtatgtggcgggcgcgggattaaaagaagagtttttttgcggagcggtaacaggacaaaaacaccttaagaatgatgtctaaattactttcctctaatctaatataatttaacatggtttaagaatataaaataatttctaaacaaacgaactttttaatattgagcttatggcccaagtgcaaaaacacaaaatcatttatcatttagattATCTGCCTGAACGCGAACCCGAACCCGAGCTTGAACGCCAGCCTGACTCAGGCGCTGCATGAACTCGGGCTGGTCCAGAACACCGCTTTCCTTGGGCCTGTCAGGTTATAGGtgaaagaaaatggtctgttttttaatgtaacaaatcacactgtgatttttgtgatatttccccaattacagctcagcTGCGCGTTTAAAGCTCAACGCATGAATTAATCGGTGCGCTGCGCGCCGCGCGTGCTCTCGGGGCATTTGACGCGTCTGTCAAGCAAGTTAATGCACCGTTTTGGGGGCAGAGATTAAGAAGTACAGCAGCTACATCTCAGATTTGTAGTTTAATGCTCTACTAAATTAGTGGCTTTAAAACTGGCTCATGATATGGTCGGttctggctggattttttccTGCCTACAGGCTGCATTTGACGGAAAGCAGCTCCTCAGTCAgacaacagtgtcagcatataaaTCGCGTGtatttcctacaggacaaaccatttaaaagtgcagatgaactcaataaaaatcacacagtgtctgtctggcttaaaatacttaggtacagcttttaaattaata

Function

GO:

id name namespace
GO:0010035 response to inorganic substance biological_process
GO:0010038 response to metal ion biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU4104 True 1279 lncRNA 0.47 1 11887968 11889246

Neighbor

gene id symbol gene type direction distance location
tmem106b tmem106b coding downstream 100826 11777578 ~ 11787142 (-)
LOC103030898 LOC108426917,LOC107588234,LOC106582211,LOC107752288,LOC107683449 coding downstream 110665 11767555 ~ 11777303 (-)
LOC103024995 NA coding downstream 161770 11714121 ~ 11726198 (-)
arl4a arl4a,arl4aa coding downstream 174697 11709625 ~ 11713271 (-)
lrrc72 NA coding downstream 579296 11304590 ~ 11308672 (-)
LOC103031554 zgc:63694,LOC108426967,LOC107752277,LOC107699226,LOC107555275,LOC108278095,LOC107728169,LOC107592659,LOC107699183 coding upstream 57224 11946470 ~ 11976692 (-)
gbe1 gbe1,gbe1b,LOC107752276,LOC102793958 coding upstream 128769 12018015 ~ 12214741 (-)
LOC103022193 LOC107699842,LOC107592657,LOC107555278 coding upstream 726408 12615654 ~ 12626454 (-)
LOC103022701 tnfrsf19,LOC108415268,LOC103474716 coding upstream 778789 12668035 ~ 12706109 (-)
ap2s1 ap2s1 coding upstream 1263773 13153019 ~ 13165105 (-)
G3149 NA non-coding downstream 3269 11884305 ~ 11884699 (-)
G3083 NA non-coding downstream 45783 11841199 ~ 11842185 (-)
G3053 lsr non-coding downstream 90484 11791059 ~ 11797484 (-)
G3067 NA non-coding downstream 124984 11762634 ~ 11762984 (-)
G3066 NA non-coding downstream 125393 11762369 ~ 11762575 (-)
G3163 NA non-coding upstream 17687 11906933 ~ 11909013 (-)
G3161 NA non-coding upstream 28628 11917874 ~ 11918345 (-)
G3263 NA non-coding upstream 679056 12568302 ~ 12569570 (-)
G3268 NA non-coding upstream 687521 12576767 ~ 12578411 (-)
G3301 NA non-coding upstream 826857 12716103 ~ 12720619 (-)
sarm1 sarm1,LOC107669752,LOC107743642,LOC107756984,LOC107685076 other downstream 594086 11281209 ~ 11293882 (-)
LOC103025442 lhx1a,LOC108427001,LOC108277614,LOC107743643,LOC105897175,LOC107669762,LOC107589700 other downstream 1203503 10654858 ~ 10684465 (-)
G2783 NA other downstream 1305221 10582289 ~ 10582747 (-)
rap1gap2 rap1gap2 other downstream 1426108 10247465 ~ 10461860 (-)
hspa13 hspa13,LOC107682527,LOC107666191,LOC107714176 other downstream 2132213 9746622 ~ 9755755 (-)
LOC111192956 LOC108412924,LOC108444125,LOC108444119,LOC108416439 other upstream 34756 11924002 ~ 11940744 (-)
G3297 sacs,LOC107593479,LOC107740366,LOC107670382 other upstream 850898 12740144 ~ 12758513 (-)
sgcg sgcg other upstream 869820 12759066 ~ 12781165 (-)
LOC111197384 NA other upstream 1240966 13130212 ~ 13135641 (-)
slc43a2 slc43a2,LOC107685082,LOC107548581,LOC107589710 other upstream 1655254 13544500 ~ 13572372 (-)

Expression


Co-expression Network