LOC111192956 (LOC108412924,LOC108444125,LOC108444119,LOC108416439)


Basic Information

Item Value
gene id LOC111192956
gene name LOC108412924,LOC108444125,LOC108444119,LOC108416439
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 11924002 ~ 11940744 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU4117
TCTTCACTGttctgggagagtggaggttcttcatggagagagctgggtcacagtgtgtgattctgactttaaccagcagggtgcagaggttgtgtgtcgagagctgggctgtggttctcctgtggagGTTCTGGGAGCAGCTGCTTTTGGTAGAGCAGAGGGTCAGATGTGGTCAGAGGAGCTTCAGTGTAGAGGAAACGAATCTCATATGTACCTCTGCCAGACATCTCCTTCCTTGAAACCCAACTGCTCTCACAACAAGGATGTGGGACTAAGATGCTCTGGTCACACTCAGGCTCGGCTGATGAACGGCTCAGACTCCTGTTCTGGTCGAGTGGAGCTCCAGTACCTCAGTGAGTGGGGTACAGTGTGTGATGTAAGCTGGGATATGAGAGC
>TU4122
ATATTTCCAGTCCAGAGTTAACTGTGTTTTTGTAAAAGTGTATGGCTCCCCCGCTGCAAAAAGCCTGCAGTGTGTGGAGcggtagagcttagatcgggcccaaaaatccagcccgacccgGCCCAAATCCATGCACTTTCTGCCCGAGCCAGACCCGACCTGAGCCATAAACTGTCCTTCTGAACCCGAGCCATTTTTTAGTAATTAGAGCGTTAAAATTGagctatttaaaacattttcgggctgtttgaattaGCGAAATCTGTtaagaattatgttaaataacctTGCGAcgctgaagaagcatagacctattattatttctttttttttattcgcttctttctttctttattccttGTCTGTTGTACAGGCAGTGTGAGGTTGGTGGATGGTGGCAGTCGCtgtgctgggagagtggaggttcttcatggagagagctgggtcacagtgtgtgatgctgactttaaccagcagggtgcagaggttgtgtgtcgagagctgggctgtggttctcctgtgaaggttctgggagcagctgcttttggtagaggggagggtcaggtgtggtcagaggagcttcagtgtagaggaaacgaatctcagattcacttctgtccaaaatcatcttcactcaaacacaactgcTCCCATGATAATGATGTGGGACTGGTGTGTGCTGACAGTGTGAGGTTGGTGGATGGTGGCCATCGCtgtgctgggagagtggaggttttTTATAGAGGACAGTGGGGATCAGTGTGTGGTAATAACTGGGATATGAGAGATGCTGCAGTGGTGTG
>TU4140
tttcagcCTTGtttgagtattattatttgagtatAAGTGTAATTATTCTCTGATTatcagtgtgtttgtttttttctccacacagaCAGTGTGAGGTTGGCGGATGGTGGCAGTCGCtgtgctgggagagtggaggttcttcatggagagagctgggtcacagtgtgtgatgctgactttgaccagcaggatgcagaggttgtgtgtcgagagctgggctgtggttctcctgtggagGTTCTGGGAGCAGCTGCTTTTGGTAGAGCAGAGGGTCAGATGTGGTCAGAGGAGCTTCAGTGTAGAGGAAACGAATCTCATATGTACCTCTGCCAGACATCTCCTTCCTTGAAACCCAACTGCTCTCACAACAAGGATGTGGGACTAAGATGCTCTGGTCACACTCAGGCTCGGCTGATGAACGGCTCAGACTCCTGTTCTGGTCGAGTGGAGCTCCAGTACCTCAGTGAGTGGGGTACAGTGTGTGATGTAAGCTGGGATATGAGAGC
>XM_022671366.1
ATGGGGAAGAGTCCGATCTGCTtcagaccaatgaaaacacgacaCAGTGTGAGGTTGGCGGATGGTGGCAGTCGCtgtgctgggagagtggaggttcttcatggagagagctgggtcacagtgtgtgatgctgactttgactcagaggagcttcagtgtagaggaaacgaatctcagattcacttctgtccaaaatcatcttcactcaaacacaactgcTCCCATGATAATGATGTGGGACTGGTGTGTGCTGACAGTGTGAGGTTGGTGGATGGTGGCCATCGCtgtgctgggagagtggaggttttTTATAGAGGACAGTGGGGATCAGTGTGTGGTAATAACTGGGATATGAGAGATGCTGCAGTGGTGacagtgtgtgattctgactttaaccagcagggtgcagaggttgtgtgtcgagagctgggctgtggttctcctgtggagATTCTGGGAGCAGCTGCTTTTGGTAGAGGGGAGGGTCCGGTGTGGTCAGAGGTGCTTCAGTGTAGAGGAAACGAATCTCAGATTCACTTCTGTCcaaaatcatcttcactcaaacacaactgcTCCCATGATAATGATGTGGGACTGGTGTGTGCAGaCAGTGTGAGGTTGGCGGATGGTGGCAGTCGCtgtgctgggagagtggaggttcttcatggagagagctgggtcacagtgtgtgatgctgactttaaccagcaggatgcagaggttgtgtgtcgagagctgggctgtggttctcctgtggagGTTCTGGGAGCAGCTGCTTTTGGTAGAGCAGAGGGTCAGATGTGGTCAGAGGAGCTTCAGTGTAGAGGAAACGAATCTCAGATTCACTTCTGTCcaaaatcatcttcactcaaacacaactgcTCCCATGATAATGATGTGGGACTGGCATGTTCTGGTCACACTCAGGCTCGGCTGATGAACGGCTCAGATTCCTGTTCTGGTCGAGTGGAGCTCCAGTACCTCAGTGAGTGGGGTACAGTGTGTGATGTAAGCTGGGATATGAGAGCTGCCAGTGTCCTCTGTGCTCAGCTGAAGTGTGGGAGTTCTGTGGCTGTGTTGGGGTCAGACTGGTTTGGGGAGGGGAGTGGCCGGATCTGGGCTGATGTGTTTGATTGTCAGGGAAACGAAACACACCTGTTAAAATGTCCCATTTCATCATGGAGTCGAACTGCATGCTCTCATGAACAGTATGCTGGAGTTATCTGTAGTGgTTCTTCTCTGGCGTCTCATGAGGGAGGAGTGCGGTTGTCTGGAGGGatggagtgtgagggggaggtGGAGGTGTTCTTCAGGCAGGACTGGAGGAGAGTTCTGCTGGACTCCTGGAGTGAGTCTGAGGCCTCTGTGGTCTGCAGACAGCTGCAGTGTGGAGTCGCCCTCAGTGCTCCAGTACCAGTACCAGCCCGGTTTGGATCTGGAACTGGACCCATTTGGCTGAATgaggtggagtgtgagggggaggtGGAGGTGTTCTTCAGGCAGGACTGGAGGAGAGTTCTGCTGGACTCCTGGAGTGAGTCTGAGGCCTCTGTGGTCTGCAGACAGCTGCAGTGTGGAGTCGCCCTCAGTGCTCCAGTACCAGTACCAGCCCGGTTTGGATCTGGAACTGGACCCATTTGGCTGAATgaggtggagtgtgagggggaggtGGAGGTGTTCTTCAGGCAGGACTGGAGGAGAGTTCTGCTGGACTCCTGGAGTGAGTCTGAGGCCTCTGTGGTCTGCAGACAGCTGCAGTGTGGAGTCGCCCTCAGTGCTCCAGTACCAGTACCAGCCCGGTTTGGATCTGGAACTGGACCCATTTGGCTGAATgaggtggagtgtgagggggaggtGGAGGTGTTCTTCAGGCAGGACTGGAGGAGAGTTCTGCTGGACTCCTGGAGTGAGTCTGAGGCCTCTGTGGTCTGCAGACAGCTGCAGTGTGGAGTCGCCCTCAGTGCTCCAGTACCAGTACCAGCCCGGTTTGGATCTGGAACTGGACCCATTTGGCTGAATgaggtggagtgtgagggggaggtGGAGGTGTTCTTCAGGCAGGACTGGAGGAGAGTTCTGCTGGACTCCTGGAGTGAGTCTGAGGCCTCTGTGGTCTGCAGACAGCTGCAGTGTGGAGTCGCCCTCAGTGCTCCAGTACCAGTACCAGCCCGGTTTGGATCTGGAACTGGACCCATTTGGCTGAATgaggtggagtgtgagggggaggtGGAGGTGTTCTTCAGGCAGGACTGGAGGAGAGTTCTGCTGGACTCCTGGAGTGAGTCTGAGGCCTCTGTGGTCTGCAGACAGCTGCAGTGTGGAGTCGCCCTCAGTGCTCCAGTACCAGTACCAGCCCGGTTTGGATCTGGAACTGGACCCATTTGGCTGAATgaggtggagtgtgagggggaggtGGAGGTGTTCTTCAGGCAGGACTGGAGGAGAGTTCTGCTGGACTCCTGGAGTGAGTCTGAGGCCTCTGTGGTCTGCAGACAGCTGCAGTGTGGAGTCGCCCTCAGTGCTCCAGTACCAGTACCAGCCCGGTTTGGATCTGGAACTGGACCCATTTGGCTGAATgaggtggagtgtgagggggaggtGGAGGTGTTCTTCAGGCAGGACTGGAGGAGAGTTCTGCTGGACTCCTGGAGTGAGTCTGAGGCCTCTGTGGTCTGCAGACAGCTGCAGTGTGGAGTCGCCCTCAGTGCTCCAGTACCAGTACCAGCCCGGTTTGGATCTGGAACTGGACCCATTTGGCTGAATgaggtggagtgtgagggggaggtGGAGGTGTTCTTCAGGCAGGACTGGAGGAGAGTTCTGCTGGACTCCTGGAGTGAGTCTGAGGCCTCTGTGGTCTGCAGACAGCTGCAGTGTGGAGTCGCCCTCAGTGCTCCAGTACCAGTACCAGCCCGGTTTGGATCTGGAACTGGACCCATTTGGCTGAATgaggtggagtgtgaggggAACGAGGCGTCTCTGTGGAACTGCAGATATCAGCTGTGTGGAGAGGATGAATGTGGACACAAGGATGATGTAGGAGTCGTGTGCTCAGAGTATAAAGAGATCAGACTGACTGAGGGCTGTGAGGGGAATCTGGAGGTGTACTATAATGGAACCTGGgggaatgtgtgtgtaaatgggaTGACTGATGAAACGGCAAAATTGATCTGTCGAGAGCTGAACTGTGGAAGAACTGGCAGTGAGTCTTGGTCTAAAGCAAGAGTGGAATCAGCTCCTAACTGGCTGGATAATGTAAAATGTAGGAAACATGACTCCACTCTGTGGCACTGTCCATCTTCTTCCTGGGGGGAGAACAGGTGTGATAATCGCAATGAGGTTGCTTGCATTACCTGCTCAGAGAATGGAAATACACTAGATTTGACAAATTGGCTGTGTGATTCATCTCCTCATGAGAGACCGTGCTCAATAGAGCACATTCCTCTGAGGCTGAGGGGAGGAGTAGGAAGCTGTTCTGGATGGCTGCAGGTGTATCATAATAAAACATGGGGGTCTGTATGTGGTGACCTCTGGGACATCAGGGATGCTCAGGTGATCTGCAGGCAGCTGGGTTGTGGGCCGGCGCTGAGTGCTAATAGAAGAGCTGCTGATGGTTCTGGTGGAGGAACTATCTGGATGAACAGAGTGAAGTGTAGAGGGAATGAGATTCACCTGTGGGACTGTCCTCATTCCCTGAAGAACCACACTGACTGCTCCCACAGTGCTGGAGTCACTTGTGGAGGCTTCCTGTATCATACTTtgcctttaaataataaaagaggaCAGATGGGACATTTTGTCTTGCAAGGTCAGGGACCACTTTTCTCCATTGTAAACAGGCTTGATAGCAACTTCGattCTCAACCACAGACAAGAAGAATCATACTTCCACAAACTCCTCCACCAGCTGTTCCCTCCATCTATCCAGTGTCTCTCCTGGTTCTGGGATATGTGCTCTTCCTGGCCTTAGTGCTTCTGGTTGTGCTGTTTTATCAGAACAGAGTGCTCAGGAGAGtgATCTCTAAGAGGAGGAAGACTTCAGCTGAGCCTGTCTATGAGGAGATTGACACCAGGCTCATCCCTAAAAGAATTACTGTCTCAACTGAAAGTAagagtaaaatgttttttttttctctcaaagcAGAAATGTCTGGtctttacagaaataatgtagCAGTTAATCAAATACTTGTCAGATAACTCTCTTTtcatattgttatattttagtgtttaaatatttagtgttttttttgtagattttcttCCTTTGTTAATAAATTACACCAATTTATCTATCTTTTCTTCCCACTGAATAATGTTCTGAATAATgtat

Function

NR:

description
PREDICTED: scavenger receptor cysteine-rich type 1 protein M130-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU4117 False 396 lncRNA 0.36 4 11928854 11932452
TU4122 False 803 lncRNA 0.34 3 11933003 11937230
TU4140 False 506 lncRNA 0.47 3 11928854 11933613
XM_022671366.1 True 4333 mRNA 0.52 15 11924002 11940744

Neighbor

gene id symbol gene type direction distance location
tmem106b tmem106b coding downstream 136860 11777578 ~ 11787142 (-)
LOC103030898 LOC108426917,LOC107588234,LOC106582211,LOC107752288,LOC107683449 coding downstream 146699 11767555 ~ 11777303 (-)
LOC103024995 NA coding downstream 197804 11714121 ~ 11726198 (-)
arl4a arl4a,arl4aa coding downstream 210731 11709625 ~ 11713271 (-)
lrrc72 NA coding downstream 615330 11304590 ~ 11308672 (-)
LOC103031554 zgc:63694,LOC108426967,LOC107752277,LOC107699226,LOC107555275,LOC108278095,LOC107728169,LOC107592659,LOC107699183 coding upstream 5726 11946470 ~ 11976692 (-)
gbe1 gbe1,gbe1b,LOC107752276,LOC102793958 coding upstream 77271 12018015 ~ 12214741 (-)
LOC103022193 LOC107699842,LOC107592657,LOC107555278 coding upstream 674910 12615654 ~ 12626454 (-)
LOC103022701 tnfrsf19,LOC108415268,LOC103474716 coding upstream 727291 12668035 ~ 12706109 (-)
ap2s1 ap2s1 coding upstream 1212275 13153019 ~ 13165105 (-)
G3161 NA non-coding downstream 5657 11917874 ~ 11918345 (-)
G3163 NA non-coding downstream 14989 11906933 ~ 11909013 (-)
G3150 NA non-coding downstream 34756 11887968 ~ 11889246 (-)
G3149 NA non-coding downstream 39303 11884305 ~ 11884699 (-)
G3083 NA non-coding downstream 81817 11841199 ~ 11842185 (-)
G3263 NA non-coding upstream 627558 12568302 ~ 12569570 (-)
G3268 NA non-coding upstream 636023 12576767 ~ 12578411 (-)
G3301 NA non-coding upstream 775359 12716103 ~ 12720619 (-)
G3324 NA non-coding upstream 1058392 12999136 ~ 12999640 (-)
G3337 NA non-coding upstream 1093745 13034489 ~ 13035079 (-)
sarm1 sarm1,LOC107669752,LOC107743642,LOC107756984,LOC107685076 other downstream 630120 11281209 ~ 11293882 (-)
LOC103025442 lhx1a,LOC108427001,LOC108277614,LOC107743643,LOC105897175,LOC107669762,LOC107589700 other downstream 1239537 10654858 ~ 10684465 (-)
G2783 NA other downstream 1341255 10582289 ~ 10582747 (-)
rap1gap2 rap1gap2 other downstream 1462142 10247465 ~ 10461860 (-)
hspa13 hspa13,LOC107682527,LOC107666191,LOC107714176 other downstream 2168247 9746622 ~ 9755755 (-)
G3297 sacs,LOC107593479,LOC107740366,LOC107670382 other upstream 799400 12740144 ~ 12758513 (-)
sgcg sgcg other upstream 818322 12759066 ~ 12781165 (-)
LOC111197384 NA other upstream 1189468 13130212 ~ 13135641 (-)
slc43a2 slc43a2,LOC107685082,LOC107548581,LOC107589710 other upstream 1603756 13544500 ~ 13572372 (-)
LOC111189390 NA other upstream 2183429 14124173 ~ 14133237 (-)

Expression


Co-expression Network