sgcg (sgcg)


Basic Information

Item Value
gene id sgcg
gene name sgcg
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 12759066 ~ 12781165 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU4315
gaaaagagtcccctccagatctctaagctaatataaACAAAAAGCAGACATGCGCAGACTCGCTGTGTGACGTCAGCGTTTCCAGAAAGGCTGGAGTCTCCAACCCGCAGTTTGAGTATGGAAGCCCCTAGAGGAGTTCATGTCAAGGCCTCGTCAGGAAATGTAGAAGCCCAAGCGAGCCTGGATGTTATTTTGCACTCAACCGAGGGTCTTGTGGTTTTAGATGCTGAATCTGTTCGGCTGCCTAACTTATTCAAGGGCATAGCTAGAACTTCAGGCGACTCTCAGGGACTATACGACATGTACGAGGTTTGCGTGTGCCCCAGCGGAAAGCTGTTCCTCTCCAAAGCCGGTGTGTTCTCCACCTGCAACGAAAGCCAAGAATGCTGAAGGCCTGTTTTCAAAGGAACTGAAGGAATATGAGATGAGAAGGTGGACCTCTTGACATTTGTTACAGAATAGTCAAGTGTTGGaaaatagtaatttttttttcacacatttaaacaGGGAAGAGAGAAGAAGCACATCGTTTGTTCTCAGGTGGGAGGCAGCGTTTACCATGAGTGCATTATGTACATTATGTACAAATCTTTCTGCATTAATCTCAGTAATGCAAGTCTTTGCAGCACCGCTGGTGTCTGTCATTCTCTTTTgggatatttatttttcttctttttcttttttttacctttttttaaaaccaaattAGGCTGGGCAAAAAGGGGCTGGTTAACAGCGTACATCCTATGCAATATGATGATTTTAAGGTGCAATAAGCAACATTTGTGTAGTAAATGTAAGTGCTGTTACAGAGATAATCCAGTAGTAAAAGTGTCGTCCTTTTTATAGACATCAGTTTAAACAAGTCATCTGTAAGAAATGTCTGTGTTGGTGGTAAAATCAGTGTGTCTCAtaaggataaaaaaatatatatccatccgtagataaagaaataaatttagCACAAAACGTAAGcaaatttgtgtgtgtaagaaacatgcatttgtgggatgagcagcagagctgagttTGTGGGTTGAACCCATGAGAATTTTGCAGAATTCACTCAGCCAATGCCAAACAGCTTCTTCTGCCATCGACTCATTTGTTGTTTGACGATCTTCTTTGGGTGTCGTCTTTGTGGGATGCCCACTTTGCGGCCTGTCTTTGACATCCCCTGTTATATGGACAAAGaaataatctaccaaacacacatttctttactttttgtgCCATGTTATTTGTGCTCTTTTTGCAAAGGTTGCTTTTTTAACAGCATGTTTGTCTCACATTGTGGATATTGTTCAGTGGGTGTTAAAATATTGCTTTAAATCTgagctttatttaataaatattaataggcATCAGTCTAAAGCCATGTTTTATGGCAAAATTGCAGGTAAACTGAGCAGGGTCAAGCAATTCCTCAATAAATTGGCCGTTGCAATGAGTAACCATATATTAACAATTTCTTCCTTTTGggagaaatcagttattttctgttattttactgtggtgatatttcattttaagtgccttcatgaattaataaatacaagccacaaattttaatgttttttttaaatgtaaaaaaataataatgttaatgtatCTTAGAAAATTTTGATATATGGTTATTCGTTGATAGAGGTTAAATATTGACCAACTTTAACAAACATAGCCACACCTCAGACATGTCTATATTTATAAGAGTATATGTATCTGGAGTTTGGTGTTATTGGCTGTTATTTGAATTAGTTGATTTTAAAGATTTCTGAGGCCAGATCTGCATGTCCAAGTGACGCTAAAAGCCTGAGAGACTGATTTCCGAAACACCCTGCCTGGTCTTTGTCGTGGTTTTGTCACTtaggttaatattaatattaagaaactgtgttttataaagtCATTTTCAAGTTCAATAAGACATGTATTGAGTGGTGTTTGTATATGTGTTATtaaaatgggattttttttgtctttaatctGGCTTTTTAATCTTTTACTGCAGAATAAATC
>TU4316
gaaaagagtcccctccagatctctaagctaatataaACAAAAAGCAGACATGCGCAGACTCGCTGTGTGACGTCAGCGTTTCCAGAAAGGTCAGTTTTCACCCATCCACACGGCTCTGCTCTCCACCTTGAAAGGTGTTTTTAGTGACCGAAAACGCCGTTTTCGTGTGGACGGATGGccaaaacggagacaaaaaaaacttttttaaaatacccGGGTTCGTGTGGACGGGGCCTTAAGAGACAACAGACATAGTTGTTCGGTTTGACACTGCTGGAGTCTCCAACCCGCAGTTTGAGTATGGAAGCCCCTAGAGGAGTTCATGTCAAGGCCTCGTCAGGAAATGTAGAAGCCCAAGCGAGCCTGGATGTTATTTTGCACTCAACCGAGGGTCTTGTGGTTTTAGATGCTGAATCTGTTCGGCTGCCTAACTTATTCAAGGGCATAGCTAGAACTTCAGGCGACTCTCAGGGACTATACGACATGTACGAGGTTTGCGTGTGCCCCAGCGGAAAGCTGTTCCTCTCCAAAGCCGGTGTGTTCTCCACCTGCAACGAAAGCCAAGAATGCTGAAGGCCTGTTTTCAAAGGAACTGAAGGAATATGAGATGAGAAGGTGGACCTCTTGACATTTGTTACAGAATAGTCAAGTGTTGGaaaatagtaatttttttttcacacatttaaacaGGGAAGAGAGAAGAAGCACATCGTTTGTTCTCAGGTGGGAGGCAGCGTTTACCATGAGTGCATTATGTACATTATGTACAAATCTTTCTGCATTAATCTCAGTAATGCAAGTCTTTGCAGCACCGCTGGTGTCTGTCATTCTCTTTTgggatatttatttttcttctttttcttttttttacctttttttaaaaccaaattAGGCTGGGCAAAAAGGGGCTGGTTAACAGCGTACATCCTATGCAATATGATGATTTTAAGGTGCAATAAGCAACATTTGTGTAGTAAATGTAAGTGCTGTTACAGAGATAATCCAGTAGTAAAAGTGTCGTCCTTTTTATAGACATCAGTTTAAACAAGTCATCTGTAAGAAATGTCTGTGTTGGTGGTAAAATCAGTGTGTCTCAtaaggataaaaaaatatatatccatccgtagataaagaaataaatttagCACAAAACGTAAGcaaatttgtgtgtgtaagaaacatgcatttgtgggatgagcagcagagctgagttTGTGGGTTGAACCCATGAGAATTTTGCAGAATTCACTCAGCCAATGCCAAACAGCTTCTTCTGCCATCGACTCATTTGTTGTTTGACGATCTTCTTTGGGTGTCGTCTTTGTGGGATGCCCACTTTGCGGCCTGTCTTTGACATCCCCTGTTATATGGACAAAGaaataatctaccaaacacacatttctttactttttgtgCCATGTTATTTGTGCTCTTTTTGCAAAGGTTGCTTTTTTAACAGCATGTTTGTCTCACATTGTGGATATTGTTCAGTGGGTGTTAAAATATTGCTTTAAATCTgagctttatttaataaatattaataggcATCAGTCTAAAGCCATGTTTTATGGCAAAATTGCAGGTAAACTGAGCAGGGTCAAGCAATTCCTCAATAAATTGGCCGTTGCAATGAGTAACCATATATTAACAATTTCTTCCTTTTGggagaaatcagttattttctgttattttactgtggtgatatttcattttaagtgccttcatgaattaataaatacaagccacaaattttaatgttttttttaaatgtaaaaaaataataatgttaatgtatCTTAGAAAATTTTGATATATGGTTATTCGTTGATAGAGGTTAAATATTGACCAACTTTAACAAACATAGCCACACCTCAGACATGTCTATATTTATAAGAGTATATGTATCTGGAGTTTGGTGTTATTGGCTGTTATTTGAATTAGTTGATTTTAAAGATTTCTGAGGCCAGATCTGCATGTCCAAGTGACGCTAAAAGCCTGAGAGACTGATTTCCGAAACACCCTGCCTGGTCTTTGTCGTGGTTTTGTCACTtaggttaatattaatattaagaaactgtgttttataaagtCATTTTCAAGTTCAATAAGACATGTATTGAGTGGTGTTTGTATATGTGTTATtaaaatgggattttttttgtctttaatctGGCTTTTTAATCTTTTACTGCAGAATAAATC
>XM_007234507.3
TCTCTTCATAGCTgtacttttcattttttctccttttttttgctttgagtGTCCGAGAGAACACATCTTTCTAATATTTTCATCAAACTATGGGTTAGTGTACAGTTGTAAAGGGGGTTTATTGGATATGTGTATCAGtgtggtggggtgtgtgtgtgtgtatagggggAAGAAAGTTGGTTCGCTCCTCAAGACCATGAGCTGGGGCTGATCCGGGATCAGATTTATGAGAGGCAGCTGTTGAGGGCTTGACGGACGGACGAGCACAAGCACTCCAGTGGTACTGCTGCCGACGCTGCAGCCACACAGAAGCTGCGTTTCCACTGCTGGCTGCAGACGAGGGGTGGGCTGTGTGTCAGTGCACAGCCCAGCAGCAAGAGTGCAAGGATGGTGCGTGAACAGTATATCACGTCTACAGAAGAATCTGGTGCTCCAGCAGCAGTGTTGGACTACATCTATAAGATTGGGATCTATGGCTGGAGGAAGCGATGCCTTTATCTGTTTGTCCTGCTGCTCATCATCATTCTGATAGTGAACCTTGGCCTCACCATCTGGATCATGAGAGTGATGTGGTTCAATGCGGAAGGTATGGGATACCTCCAGGTCACAGCAGATGGGGTGAGGTTGGAGGGCGAGTCTGAATTCCTTTTCCCAATCTATGCCCATGAGATCGACTCCAGAGAGgactCAGCTCTGCTTGTGCACTCGACTGATAATGTGACTCTCAATGCCCGCAATGCGAACGGTGATGTAACCGGAAGTGTGTCTGTAGGTCCAGGACATGCCCAAGCTTTTGGTCAGCATTTGAATGTCAGCTCAAACACTGATAAGACCGTCTTCTATGCGGATGCGAAAGAAGCTGTTGTGGGAACTGGAAAGCTCAGAGTTACAGgcGATGAAGGTGCTCTATTCGAGCACTCTGTTGAAACGCCTCAGGTCAAGGCAGAACCTCTGAAAGACCTTAGGCTGGAGTCTCCAACCCGCAGTTTGAGTATGGAAGCCCCTAGAGGAGTTCATGTCAAGGCCTCGTCAGGAAATGTAGAAGCCCAAGCGAGCCTGGATGTTATTTTGCACTCAACCGAGGGTCTTGTGGTTTTAGATGCTGAATCTGTTCGGCTGCCTAACTTATTCAAGGGCATAGCTAGAACTTCAGGCGACTCTCAGGGACTATACGACATGTACGAGGTTTGCGTGTGCCCCAGCGGAAAGCTGTTCCTCTCCAAAGCCGGTGTGTTCTCCACCTGCAACGAAAGCCAAGAATGCTGAAGGCCTGTTTTCAAAGGAACTGAAGGAATATGAGATGAGAAGGTGGACCTCTTGACATTTGTTACAGAATAGTCAAGTGTTGGaaaatagtaatttttttttcacacatttaaacaGGGAAGAGAGAAGAAGCACATCGTTTGTTCTCAGGTGGGAGGCAGCGTTTACCATGAGTGCATTATGTACATTATGTACAAATCTTTCTGCATTAATCTCAGTAATGCAAGTCTTTGCAGCACCGCTGGTGTCTGTCATTCTCTTTTgggatatttatttttcttctttttcttttttttacctttttttaaaaccaaattAGGCTGGGCAAAAAGGGGCTGGTTAACAGCGTACATCCTATGCAATATGATGATTTTAAGGTGCAATAAGCAACATTTGTGTAGTAAATGTAAGTGCTGTTACAGAGATAATCCAGTAGTAAAAGTGTCGTCCTTTTTATAGACATCAGTTTAAACAAGTCATCTGTAAGAAATGTCTGTGTTGGTGGTAAAATCAGTGTGTCTCAtaaggataaaaaaatatatatccatccgtagataaagaaataaatttagCACAAAACGTAAGcaaatttgtgtgtgtaagaaacatgcatttgtgggatgagcagcagagctgagttTGTGGGTTGAACCCATGAGAATTTTGCAGAATTCACTCAGCCAATGCCAAACAGCTTCTTCTGCCATCGACTCATTTGTTGTTTGACGATCTTCTTTGGGTGTCGTCTTTGTGGGATGCCCACTTTGCGGCCTGTCTTTGACATCCCCTGTTATATGGACAAAGaaataatctaccaaacacacatttctttactttttgtgCCATGTTATTTGTGCTCTTTTTGCAAAGGTTGCTTTTTTAACAGCATGTTTGTCTCACATTGTGGATATTGTTCAGTGGGTGTTAAAATATTGCTTTAAATCTgagctttatttaataaatattaataggcATCAGTCTAAAGCCATGTTTTATGGCAAAATTGCAGGTAAACTGAGCAGGGTCAAGCAATTCCTCAATAAATTGGCCGTTGCAATGAGTAACCATATATTAACAATTTCTTCCTTTTGggagaaatcagttattttctgttattttactgtggtgatatttcattttaagtgccttcatgaattaataaatacaagccacaaattttaatgttttttttaaatgtaaaaaaataataatgttaatgtatCTTAGAAAATTTTGATATATGGTTATTCGTTGATAGAGGTTAAATATTGACCAACTTTAACAAACATAGCCACACCTCAGACATGTCTATATTTATAAGAGTATATGTATCTGGAGTTTGGTGTTATTGGCTGTTATTTGAATTAGTTGATTTTAAAGATTTCTGAGGCCAGATCTGCATGTCCAAGTGACGCTAAAAGCCTGAGAGACTGATTTCCGAAACACCCTGCCTGGTCTTTGTCGTGGTTTTGTCACTtaggttaatattaatattaagaaactgtgttttataaagtCATTTTCAAGTTCAATAAGACATGTATTGAGTGGTGTTTGTATATGTGTTATtaaaatgggattttttttgtctttaatctGGCTTTTTAATCTTTTACTGCAGAATAAATCAGAAAAGATTGTGTTGCTGCATGTGTTTGCTAATATGgtgataagtaaaaaaaagtctcaGACTATGATTTCACATCTTCTAGTTAGGCTAAGGCTGTCCTATTTTAATGACAGTTGTTTGGGTCTacgtacaaaaaaataatatgattaATTTTGATACAATTTCTTATAAATAAACAGGTTGTTTTGTGTCCAA

Function

symbol description
sgcg Predicted to be involved in cardiac muscle tissue development and heart contraction. Located in sarcolemma. Is expressed in musculature system and somite. Human ortholog(s) of this gene implicated in autosomal recessive limb-girdle muscular dystrophy type 2C and type 2 diabetes mellitus. Orthologous to human SGCG (sarcoglycan gamma).

NR:

description
PREDICTED: gamma-sarcoglycan

GO:

id name namespace
GO:0042383 sarcolemma cellular_component
GO:0016012 sarcoglycan complex cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K12564 SGCG; gamma-sarcoglycan

RNA

RNA id representative length rna type GC content exon number start site end site
TU4315 False 2019 lncRNA 0.46 3 12759262 12762601
TU4316 False 2202 lncRNA 0.54 3 12759262 12762601
XM_007234507.3 True 3091 mRNA 0.40 8 12759066 12781165

Neighbor

gene id symbol gene type direction distance location
LOC103022701 tnfrsf19,LOC108415268,LOC103474716 coding downstream 52957 12668035 ~ 12706109 (-)
LOC103022193 LOC107699842,LOC107592657,LOC107555278 coding downstream 132612 12615654 ~ 12626454 (-)
gbe1 gbe1,gbe1b,LOC107752276,LOC102793958 coding downstream 544325 12018015 ~ 12214741 (-)
LOC103031554 zgc:63694,LOC108426967,LOC107752277,LOC107699226,LOC107555275,LOC108278095,LOC107728169,LOC107592659,LOC107699183 coding downstream 782374 11946470 ~ 11976692 (-)
tmem106b tmem106b coding downstream 971924 11777578 ~ 11787142 (-)
ap2s1 ap2s1 coding upstream 371854 13153019 ~ 13165105 (-)
tmem160 tmem160,LOC106537151 coding upstream 678535 13459700 ~ 13467692 (-)
LOC103047661 LOC101071669,LOC106934088,LOC102221054 coding upstream 703009 13484174 ~ 13513361 (-)
LOC103047347 pitpna,LOC107685084,LOC107743636,LOC107548584,LOC107756865 coding upstream 745254 13526419 ~ 13541264 (-)
LOC103046123 NA coding upstream 793609 13574774 ~ 13581467 (-)
G3301 NA non-coding downstream 38447 12716103 ~ 12720619 (-)
G3268 NA non-coding downstream 180655 12576767 ~ 12578411 (-)
G3263 NA non-coding downstream 189496 12568302 ~ 12569570 (-)
G3161 NA non-coding downstream 840721 11917874 ~ 11918345 (-)
G3163 NA non-coding downstream 850053 11906933 ~ 11909013 (-)
G3324 NA non-coding upstream 217971 12999136 ~ 12999640 (-)
G3337 NA non-coding upstream 253324 13034489 ~ 13035079 (-)
G3354 NA non-coding upstream 314313 13095478 ~ 13096194 (-)
G3356 NA non-coding upstream 365973 13147138 ~ 13151004 (-)
LOC111197623 NA non-coding upstream 600089 13381254 ~ 13384947 (-)
G3297 sacs,LOC107593479,LOC107740366,LOC107670382 other downstream 553 12740144 ~ 12758513 (-)
LOC111192956 LOC108412924,LOC108444125,LOC108444119,LOC108416439 other downstream 818322 11924002 ~ 11940744 (-)
sarm1 sarm1,LOC107669752,LOC107743642,LOC107756984,LOC107685076 other downstream 1465184 11281209 ~ 11293882 (-)
LOC103025442 lhx1a,LOC108427001,LOC108277614,LOC107743643,LOC105897175,LOC107669762,LOC107589700 other downstream 2074601 10654858 ~ 10684465 (-)
G2783 NA other downstream 2176319 10582289 ~ 10582747 (-)
LOC111197384 NA other upstream 349047 13130212 ~ 13135641 (-)
slc43a2 slc43a2,LOC107685082,LOC107548581,LOC107589710 other upstream 763335 13544500 ~ 13572372 (-)
LOC111189390 NA other upstream 1343008 14124173 ~ 14133237 (-)
G3612 NA other upstream 1502458 14283623 ~ 14284225 (-)
slc6a4 slc6a4,slc6a4a,LOC107743629,LOC107669739,LOC107548586,LOC107756784,LOC107589714,LOC107685089 other upstream 1599590 14380755 ~ 14471752 (-)

Expression


Co-expression Network