G3324


Basic Information

Item Value
gene id G3324
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 12999136 ~ 12999640 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU4353
GGGAAAAcccgcctttataaagagatagggagcccgagaactggcggaaaaacgagaatgggcggaaactaaaaacacgccgagcgcgagagagagagagacaggggagaaagcgagatgcgtgtgattgggggagaGCGGAGGGGGATGGGGAAGGGaacgcggtgtgtgtgtgtgtgtgtgaggtggagagagagagagagagagcgagagtaacgcacagtgacttggataagtaactttaatctgattactgcattggaaatagtaacgcgttagattactcgttactgaaaaaagagtcagattagagtaacgcgttactaacaTCACTGCTTGGGACCCTGTGTCAGCGTGAGGCTGCCgtaaaaaaaatgcctttttaatttatttagacagCAGTCATATTCATATTGTTCTACCCAGCTACTGATGCATCTGTAACTCTTTACAATCAgggtaaaaaataacagtacttacgacTGTAATAAACATTAAGTGGTAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU4353 True 505 lncRNA 0.33 1 12999136 12999640

Neighbor

gene id symbol gene type direction distance location
LOC103022701 tnfrsf19,LOC108415268,LOC103474716 coding downstream 293027 12668035 ~ 12706109 (-)
LOC103022193 LOC107699842,LOC107592657,LOC107555278 coding downstream 372682 12615654 ~ 12626454 (-)
gbe1 gbe1,gbe1b,LOC107752276,LOC102793958 coding downstream 784395 12018015 ~ 12214741 (-)
LOC103031554 zgc:63694,LOC108426967,LOC107752277,LOC107699226,LOC107555275,LOC108278095,LOC107728169,LOC107592659,LOC107699183 coding downstream 1022444 11946470 ~ 11976692 (-)
tmem106b tmem106b coding downstream 1211994 11777578 ~ 11787142 (-)
ap2s1 ap2s1 coding upstream 153379 13153019 ~ 13165105 (-)
tmem160 tmem160,LOC106537151 coding upstream 460060 13459700 ~ 13467692 (-)
LOC103047661 LOC101071669,LOC106934088,LOC102221054 coding upstream 484534 13484174 ~ 13513361 (-)
LOC103047347 pitpna,LOC107685084,LOC107743636,LOC107548584,LOC107756865 coding upstream 526779 13526419 ~ 13541264 (-)
LOC103046123 NA coding upstream 575134 13574774 ~ 13581467 (-)
G3301 NA non-coding downstream 278517 12716103 ~ 12720619 (-)
G3268 NA non-coding downstream 420725 12576767 ~ 12578411 (-)
G3263 NA non-coding downstream 429566 12568302 ~ 12569570 (-)
G3161 NA non-coding downstream 1080791 11917874 ~ 11918345 (-)
G3163 NA non-coding downstream 1090123 11906933 ~ 11909013 (-)
G3337 NA non-coding upstream 34849 13034489 ~ 13035079 (-)
G3354 NA non-coding upstream 95838 13095478 ~ 13096194 (-)
G3356 NA non-coding upstream 147498 13147138 ~ 13151004 (-)
LOC111197623 NA non-coding upstream 381614 13381254 ~ 13384947 (-)
G3459 prpf8 non-coding upstream 674468 13674108 ~ 13674572 (-)
sgcg sgcg other downstream 217971 12759066 ~ 12781165 (-)
G3297 sacs,LOC107593479,LOC107740366,LOC107670382 other downstream 240623 12740144 ~ 12758513 (-)
LOC111192956 LOC108412924,LOC108444125,LOC108444119,LOC108416439 other downstream 1058392 11924002 ~ 11940744 (-)
sarm1 sarm1,LOC107669752,LOC107743642,LOC107756984,LOC107685076 other downstream 1705254 11281209 ~ 11293882 (-)
LOC103025442 lhx1a,LOC108427001,LOC108277614,LOC107743643,LOC105897175,LOC107669762,LOC107589700 other downstream 2314671 10654858 ~ 10684465 (-)
LOC111197384 NA other upstream 130572 13130212 ~ 13135641 (-)
slc43a2 slc43a2,LOC107685082,LOC107548581,LOC107589710 other upstream 544860 13544500 ~ 13572372 (-)
LOC111189390 NA other upstream 1124533 14124173 ~ 14133237 (-)
G3612 NA other upstream 1283983 14283623 ~ 14284225 (-)
slc6a4 slc6a4,slc6a4a,LOC107743629,LOC107669739,LOC107548586,LOC107756784,LOC107589714,LOC107685089 other upstream 1381115 14380755 ~ 14471752 (-)

Expression


Co-expression Network