LOC111197384


Basic Information

Item Value
gene id LOC111197384
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 13130212 ~ 13135641 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU4408
CATCATTCTAACAGTCACACACTGACATTCGAAAGGTGAAGGTGTACGACTAACAGCAGCACGTTTTCAGAGAACGATGAGCTTCAGAAATCTCTCAGATACTCCTCCTTTACAACAGTCAGGCACTGCAATGTCCTTTCAGACCAGAGGTGGCAGCAATGGCCTGGTATTTAAAGCTGTGTCAACAGACACACCACTTGTCAGTGGTGGGGGACATGTTGTGATTCCCACCGATGTAGCCTCTGTGATCCCACTTCAAAAAGGAGGCAGCGATGGACGGTACAAAAAGACAATTTTGTACCATCACAGACCCCTCATATAAGAGGTGGTGTCATGGTCCCTGTAGACGTGCCCTTAAGCAGTGACATAATTTCAAAAGACCAAAGAGGTGGCAGCTCTGGAAATCAGCAgcaaagaaagagacaaagatcAGAGGACCGACATCCAGTTCCTCGTCCTAAAAAGGGGCCACATAGTAAAAGgaTGTTCAGAGGAAGATCCAGAATGTGCACATCAGAGAAGTTTGATGACCATGTCTCCAGGCCAATCACGATGTGGCAGATTGAAGAGCGTGAAGAGATGAAAAGGGAGGCCAGAAGTAATCGTCAATACAAAGCAAGAAGAACTAAGTTCGGCTTGGACCGCAATGTCTGGGTTAACAGAGAGCTGTACCCCGAGAacttacttttacatttttgatacTCAGCCCTATTTTTGGCTGTGTGACTGTTTCAACATTCACTATAGCTCTTCATTacacatttaattcatttacatGAATTAAAGCTCCACATTATGTCTATGTACtggtgtttttgttctgttatttgtttgtactgtgtGGGTCGACCCGAGGGGGATGGGTTTCTCTttctgagtcttggttcctcctaaggtttctccctcttaatgtaagggagtttttccttgccactgttgtcaCCACAATTATTGGCATTACTGTGGTGCTCGCTCATAAGAGACTTGGAcccgtttttttttgtaaatctgttttgtgacaacttttactgtaaaaagggctatataaataaaactgaattgaactgaa
>XR_002652423.1
TTGTACCATCACAGACCCCTCATATAAGAGGTGGTGTCATGGTCCCTGTAGACGTGCCCTTAAGCAGTGACATAATTTCAAAAGACCAAAGAGGTGGCAGCTCTGGAAATCAGCAgcaaagaaagagacaaagatcAGAGGACCGACATCCAGTTCCTCGTCCTAAAAAGGGGCCACATAGTAAAAGGTAAATTTCATGCTAAATTTTGTTGCACTGTGttcctgtactcagatgtaatgacctATTGACTCTTgacttaaatgtttaaaaggaTGTTCAGAGGAAGATCCAGAATGTGCACATCAGAGAAGTTTGATGACCATGTCTCCAGGCCAATCACGATGTGGCAGATTGAAGAGCGTGAAGAGATGAAAAGGGAGGCCAGAAGTAATCGTCAATACAAAGCAAGAAGAACTAAGTTCGGCTTGGACCGCAATGTCTGGGTTAACAGAGAGCTGTACCCCGAGAacttacttttacatttttgatacTCAGCCCTATTTTTGGCTGTGTGACTGTTTCAACATTCACTATAGCTCTTCATTacacatttaattcatttacatGAATTAAAGCTCCACATTATGTCTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU4408 True 1069 TUCP 0.37 5 13130212 13135641
XR_002652423.1 False 592 lncRNA 0.41 2 13130479 13131502

Neighbor

gene id symbol gene type direction distance location
LOC103022701 tnfrsf19,LOC108415268,LOC103474716 coding downstream 424103 12668035 ~ 12706109 (-)
LOC103022193 LOC107699842,LOC107592657,LOC107555278 coding downstream 503758 12615654 ~ 12626454 (-)
gbe1 gbe1,gbe1b,LOC107752276,LOC102793958 coding downstream 915471 12018015 ~ 12214741 (-)
LOC103031554 zgc:63694,LOC108426967,LOC107752277,LOC107699226,LOC107555275,LOC108278095,LOC107728169,LOC107592659,LOC107699183 coding downstream 1153520 11946470 ~ 11976692 (-)
tmem106b tmem106b coding downstream 1343070 11777578 ~ 11787142 (-)
ap2s1 ap2s1 coding upstream 17378 13153019 ~ 13165105 (-)
tmem160 tmem160,LOC106537151 coding upstream 324059 13459700 ~ 13467692 (-)
LOC103047661 LOC101071669,LOC106934088,LOC102221054 coding upstream 348533 13484174 ~ 13513361 (-)
LOC103047347 pitpna,LOC107685084,LOC107743636,LOC107548584,LOC107756865 coding upstream 390778 13526419 ~ 13541264 (-)
LOC103046123 NA coding upstream 439133 13574774 ~ 13581467 (-)
G3354 NA non-coding downstream 34018 13095478 ~ 13096194 (-)
G3337 NA non-coding downstream 95133 13034489 ~ 13035079 (-)
G3324 NA non-coding downstream 130572 12999136 ~ 12999640 (-)
G3301 NA non-coding downstream 409593 12716103 ~ 12720619 (-)
G3268 NA non-coding downstream 551801 12576767 ~ 12578411 (-)
G3356 NA non-coding upstream 11497 13147138 ~ 13151004 (-)
LOC111197623 NA non-coding upstream 245613 13381254 ~ 13384947 (-)
G3459 prpf8 non-coding upstream 538467 13674108 ~ 13674572 (-)
G3469 NA non-coding upstream 544878 13680519 ~ 13721025 (-)
G3474 NA non-coding upstream 554120 13689761 ~ 13691882 (-)
sgcg sgcg other downstream 349047 12759066 ~ 12781165 (-)
G3297 sacs,LOC107593479,LOC107740366,LOC107670382 other downstream 371699 12740144 ~ 12758513 (-)
LOC111192956 LOC108412924,LOC108444125,LOC108444119,LOC108416439 other downstream 1189468 11924002 ~ 11940744 (-)
sarm1 sarm1,LOC107669752,LOC107743642,LOC107756984,LOC107685076 other downstream 1836330 11281209 ~ 11293882 (-)
LOC103025442 lhx1a,LOC108427001,LOC108277614,LOC107743643,LOC105897175,LOC107669762,LOC107589700 other downstream 2445747 10654858 ~ 10684465 (-)
slc43a2 slc43a2,LOC107685082,LOC107548581,LOC107589710 other upstream 408859 13544500 ~ 13572372 (-)
LOC111189390 NA other upstream 988532 14124173 ~ 14133237 (-)
G3612 NA other upstream 1147982 14283623 ~ 14284225 (-)
slc6a4 slc6a4,slc6a4a,LOC107743629,LOC107669739,LOC107548586,LOC107756784,LOC107589714,LOC107685089 other upstream 1245114 14380755 ~ 14471752 (-)
LOC103022652 LOC103022652,LOC108425821,LOC108277503 other upstream 3142364 16278005 ~ 16282632 (-)

Expression


Co-expression Network