G3469


Basic Information

Item Value
gene id G3469
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 13680519 ~ 13721025 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU4572
CTGGTAATAATTCTTCACATTGCCTACAATTGGAGTAACAAGGATATGTCAGTTTGATTTAGCAACTTTATTTAAACAGgaagaagagagacagaaataactGCCTATTAGCTGTGTTTCTCTCAAATTTCAAATGGCGGCCTACCGGTAGAGACTTTGTCCACCCTTCACACTAACACCAGGAGGTGAGTAAACACCACAATTAAACAactaaacaaacacattaactctctctctctctctctctctctctcacacacacacacaca

Function

GO:

id name namespace
GO:0008210 estrogen metabolic process biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU4572 True 269 lncRNA 0.32 2 13680519 13721025

Neighbor

gene id symbol gene type direction distance location
myo1c myo1c,LOC107756890,LOC107743634 coding downstream 21595 13591095 ~ 13658924 (-)
LOC103046123 NA coding downstream 99052 13574774 ~ 13581467 (-)
LOC103047347 pitpna,LOC107685084,LOC107743636,LOC107548584,LOC107756865 coding downstream 139255 13526419 ~ 13541264 (-)
LOC103047661 LOC101071669,LOC106934088,LOC102221054 coding downstream 167158 13484174 ~ 13513361 (-)
tmem160 tmem160,LOC106537151 coding downstream 212827 13459700 ~ 13467692 (-)
LOC103025751 LOC108427003,LOC107730853,LOC107582235,LOC107683286,LOC108277959 coding upstream 13448 13734473 ~ 13750279 (-)
LOC103035060 LOC108440363 coding upstream 417424 14138449 ~ 14168938 (-)
git1 git1,LOC107685085,LOC107669736,LOC107548582,LOC105889552,LOC106580798 coding upstream 534290 14255315 ~ 14279290 (-)
LOC103037230 ssh2,LOC108440358 coding upstream 610780 14331805 ~ 14364469 (-)
blmh blmh,LOC107743628 coding upstream 693229 14414254 ~ 14435382 (-)
G3459 prpf8 non-coding downstream 5947 13674108 ~ 13674572 (-)
LOC111197623 NA non-coding downstream 295572 13381254 ~ 13384947 (-)
G3356 NA non-coding downstream 529515 13147138 ~ 13151004 (-)
G3354 NA non-coding downstream 584325 13095478 ~ 13096194 (-)
G3337 NA non-coding downstream 645440 13034489 ~ 13035079 (-)
G3610 NA non-coding upstream 526617 14247642 ~ 14247859 (-)
LOC111190296 NA non-coding upstream 560007 14281032 ~ 14318897 (-)
G3621 NA non-coding upstream 640975 14362000 ~ 14363072 (-)
LOC107197060 NA non-coding upstream 648188 14369213 ~ 14371084 (-)
LOC111190767 NA non-coding upstream 716646 14437671 ~ 14513968 (-)
slc43a2 slc43a2,LOC107685082,LOC107548581,LOC107589710 other downstream 108147 13544500 ~ 13572372 (-)
LOC111197384 NA other downstream 544878 13130212 ~ 13135641 (-)
sgcg sgcg other downstream 899354 12759066 ~ 12781165 (-)
G3297 sacs,LOC107593479,LOC107740366,LOC107670382 other downstream 922006 12740144 ~ 12758513 (-)
LOC111192956 LOC108412924,LOC108444125,LOC108444119,LOC108416439 other downstream 1739775 11924002 ~ 11940744 (-)
LOC111189390 NA other upstream 403148 14124173 ~ 14133237 (-)
G3612 NA other upstream 562598 14283623 ~ 14284225 (-)
slc6a4 slc6a4,slc6a4a,LOC107743629,LOC107669739,LOC107548586,LOC107756784,LOC107589714,LOC107685089 other upstream 659730 14380755 ~ 14471752 (-)
LOC103022652 LOC103022652,LOC108425821,LOC108277503 other upstream 2556980 16278005 ~ 16282632 (-)
ercc2 ercc2,LOC107743694,LOC107601732 other upstream 2923467 16644492 ~ 16653968 (-)

Expression


Co-expression Network