G3474


Basic Information

Item Value
gene id G3474
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 13689761 ~ 13691882 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU4577
cttgattgttttatttggaaGTCAAAGGCCTGTAGATGTATTCATACAAAAGTAAATTGGAACACCACTGACAAATACTGTGGGCATGACAGAGATGCCCAGATTCCCCAAAGTGTCTTCATTTCAGGCCACCAGTCCACTCAAGTCTGGAAGCGCTCACATGATCTCTGGTTTCCCCTAAAGGAAACAGAGGCTTCCTCTGTGTGAACACCTAAAGACAAACAGAAAGACACAAAGGGACAGCAGCACAACCCATgctatacacacaaacactgaggtcatattataaacatttccaGATAAACTCATTAATTATTAGAATACTTAGAATGCTTCTAAGAAATCTTTGGCTTTTCAACAAAACCCAAACAAGTTTCTCACAATGTTTAGGTcagtgactgtagaaaacatggacaGAAGACCAAAGAACATTTGCTCATCTGCTGGCAGGTTGCAGTATATTCTCTGTGCTACTATTGGcgcattaaatcattttttttaacgttATTCAGACTATATCGTAAGAAGGCAGGGTTACACTTAGGAATTAAGTGGCTGACTGCTTTAGCTGAaagacaaaattaaattaaaacaaaattaaatgaacaaataCATCTGCAGCACATTTTTCTTCATTACTGTATGCATTTTCTGACTAAGAGATAAGAATATGAGAATggtggaataaaaaataataatgaaaaattaataataaacaaaaaaaaaaatcacagttttaaataatTCCCAAAACTGCTCATTCACATTAATGCAATCCCTTTGTTAAGTACATACAACACAAAATTATGGTCAGGAAAAATGGCTGAGGCCATATCCATATATTGTaataaagtaagtaaaataAGTTGTAATAAAGTAATGATCATGTCTTGACTACTTTGAGTAGCTGtgtaatattgtcattaatatttgttcttGTCTAATCACACAAATTTTTTTCTGATCAGgacaaaaaaaaggttaaacaaaCTGGAAATAAAGAGGAAAAGTCTGCATTGCTTCTGCTCCTTTAGACTGTGCTATAAGCTCAATGCAGGAAGAATAGGTTGGGTCTATCAAATAAGTGGGTGAGCCTAGCTCTGCCTACCTGGTTTCTTTTACACAGACTCTAGTTGCAAATTTGACAGCAGGATGGACactttttacttaatttcttcAGAACAGAATGGAATGGTGCCACAGtgtccatgttttctacagttGACTGCATGTCATTCAGGATTCTGGGACAAAACACTGAGGTACATTATTGCTATTTACCATACAATTCATATATAATGTTTGGACAAACCAAACTCTACTGCATTTAAAGGAACAGCTAGTGTCCTAAAGGCTGGTTTACAGACAACACAACTGGTATGTTATGCCCATATATAAAGGATTAaaagttattatatatttttataatacatGAAGAACTGTTTCAaaatcttaaaaaTCCTAAGAATGAATCCTAAGAATGTACTTAAAATGAATTACAAAACGTTCTAATGGCCCCTAGTGGCAGAAAAAGGTACTGGTTTGGCTTAATTGTGTTTTAATACATACTGGCATCTTTGgttaaaattcatattaaaatacactctctacaaaaaataacaatttcctcttttcatataaaacaatatagagATTTGGTATCGGTTCCCAATATAGAtttctttttacataaaataattgcTCTCATTACTTTTCTAGTGCTTTCTGTTGATACTGTGaactaattaaaatgttttcagatGGTATATCAATATAAATGTCATCTAGTGTCTCTGTTCCCTTCAATATCTGTACATCAAACTCTAAATGGTGTGCAGAGCATACAGCATCCAAGCTGTACACCATCGTGCAGTGTTCAAGTTCTCAGGCAGGGTGTATATATGATTGTATATAGCTCTCAGGGTGGGTCTCTGGATTACGTCTCCAGCTCAGGCTCCTCTTCGTCTGGGTTGATGATCTCCCACGTGGAACTGGACGTCTGATGGCCGGGGCTCCTGCCACTGCCCGAGCGGGTCAGGAAGCCGAAG

Function

GO:

id name namespace
GO:0015988 energy coupled proton transmembrane transport, against electrochemical gradient biological_process
GO:0004300 enoyl-CoA hydratase activity molecular_function

KEGG:

id description
ko00071 Fatty acid degradation
ko00280 Valine, leucine and isoleucine degradation

RNA

RNA id representative length rna type GC content exon number start site end site
TU4577 True 2048 lncRNA 0.53 2 13689761 13691882

Neighbor

gene id symbol gene type direction distance location
myo1c myo1c,LOC107756890,LOC107743634 coding downstream 30837 13591095 ~ 13658924 (-)
LOC103046123 NA coding downstream 108294 13574774 ~ 13581467 (-)
LOC103047347 pitpna,LOC107685084,LOC107743636,LOC107548584,LOC107756865 coding downstream 148497 13526419 ~ 13541264 (-)
LOC103047661 LOC101071669,LOC106934088,LOC102221054 coding downstream 176400 13484174 ~ 13513361 (-)
tmem160 tmem160,LOC106537151 coding downstream 222069 13459700 ~ 13467692 (-)
LOC103043894 LOC108426997,LOC107589740 coding upstream 12101 13703983 ~ 13713375 (-)
LOC103025751 LOC108427003,LOC107730853,LOC107582235,LOC107683286,LOC108277959 coding upstream 42591 13734473 ~ 13750279 (-)
LOC103035060 LOC108440363 coding upstream 446567 14138449 ~ 14168938 (-)
git1 git1,LOC107685085,LOC107669736,LOC107548582,LOC105889552,LOC106580798 coding upstream 563433 14255315 ~ 14279290 (-)
LOC103037230 ssh2,LOC108440358 coding upstream 639923 14331805 ~ 14364469 (-)
G3459 prpf8 non-coding downstream 15189 13674108 ~ 13674572 (-)
LOC111197623 NA non-coding downstream 304814 13381254 ~ 13384947 (-)
G3356 NA non-coding downstream 538757 13147138 ~ 13151004 (-)
G3354 NA non-coding downstream 593567 13095478 ~ 13096194 (-)
G3337 NA non-coding downstream 654682 13034489 ~ 13035079 (-)
G3610 NA non-coding upstream 555760 14247642 ~ 14247859 (-)
LOC111190296 NA non-coding upstream 589150 14281032 ~ 14318897 (-)
G3621 NA non-coding upstream 670118 14362000 ~ 14363072 (-)
LOC107197060 NA non-coding upstream 677331 14369213 ~ 14371084 (-)
LOC111190767 NA non-coding upstream 745789 14437671 ~ 14513968 (-)
slc43a2 slc43a2,LOC107685082,LOC107548581,LOC107589710 other downstream 117389 13544500 ~ 13572372 (-)
LOC111197384 NA other downstream 554120 13130212 ~ 13135641 (-)
sgcg sgcg other downstream 908596 12759066 ~ 12781165 (-)
G3297 sacs,LOC107593479,LOC107740366,LOC107670382 other downstream 931248 12740144 ~ 12758513 (-)
LOC111192956 LOC108412924,LOC108444125,LOC108444119,LOC108416439 other downstream 1749017 11924002 ~ 11940744 (-)
LOC111189390 NA other upstream 432291 14124173 ~ 14133237 (-)
G3612 NA other upstream 591741 14283623 ~ 14284225 (-)
slc6a4 slc6a4,slc6a4a,LOC107743629,LOC107669739,LOC107548586,LOC107756784,LOC107589714,LOC107685089 other upstream 688873 14380755 ~ 14471752 (-)
LOC103022652 LOC103022652,LOC108425821,LOC108277503 other upstream 2586123 16278005 ~ 16282632 (-)
ercc2 ercc2,LOC107743694,LOC107601732 other upstream 2952610 16644492 ~ 16653968 (-)

Expression


Co-expression Network