G4252


Basic Information

Item Value
gene id G4252
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 16561520 ~ 16562762 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU5764
AATTTCTGTCGTTCCCAGGCTGGAGGGCTGCACGAGAAGACATTGTCCCTGAGCTCTTCTTCTTTACTTCACTcctctttttttgtcttgtcttctctCCCGACGACCACACGTTACGTACTCCTTCtacttatatatgtatgtacgatatacatatatatgtgtgtgtgtgtttggaccaACAAAGCAGATCTGATGTCATTTGCCCCCCTGCATATTATCTCACacccactgctgctgctgctggactgTTCTTGCTGGAGGCAGCCACTGCCCTCGCTTAGACAGTCAGATAGACAGACTGTGGCTGGATggctaggttagttagctagtcagttaCGTTAGTTAACTAGCTCCTAGCCAGCTGGTCATGCAGGAGGCTTGAGTATGAAGAATGAAGGTGGTCTGGGATCTTTCCCCCCTTTTAGAAGCTGCAAAAGAGCTGTAGACGCTCAAACAATCCGCATTTCCAgtactatacaatatatacagctatacacacagtgctgtgTCACCACCCTATACTGAAAAAAGCCAgaaaagagggaaaagagagaaaggatgaAAAAGAAGGGGTCCAGCCTTTAACCTTTAAATCTgtgcctttctttctctttcttcttgtcGTCTTTATCTGCCTGGAGAGAAAGAACGGCTCGTTTTCTCTGCTGACAAACGATAAAAACAAGTCCAGTCCAGTGTTTCCATTATTGTGTCCGCAGGCACGGTTTCTACTGTGTCTCTggtttctcttttcttccctctctctctctgtccctgcGTCTCCAAACAAgaggtaaaaacaaataattaaaacaaacaaaataaaggggaaaaaataagctATTTTTTTCAAGAAAGCGGAGTCTCGGTTAAATCACaccactccctcacacacacacagcgtccCCTCAGAAGAGTCATCTGCGCCCATTtccaggaaaaataaataaataaataaaagactaaAGTAGCCCAGCAGAAGCTGAggatccagcagcagcagcagatgtgTGAACTAGCTCAgcttaggttaggttagctaggCTAACCTAGAAACACAAGAAAGAAAACGgatgtctctctctcccacccTTAGCTACCGCCGCTCCAACGGTCCGCCGAGGCTAAGACGCTCCAAACAgctaaaatatgtataaaaaaataaaaatgtctacatatgtatatataatccCAAACAGACGTTCGTCAGAACATCTCCGCTCACAGTATGAAATTCAGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU5764 True 1243 lncRNA 0.44 1 16561520 16562762

Neighbor

gene id symbol gene type direction distance location
LOC103030646 NA coding downstream 13780 16542948 ~ 16547740 (-)
LOC103047885 NA coding downstream 110518 16439618 ~ 16451002 (-)
plekhg2 NA coding downstream 148921 16339721 ~ 16412599 (-)
supt5h supt5h,LOC107586261,LOC107657557 coding downstream 250871 16291524 ~ 16310649 (-)
LOC103025059 tnfaip1,LOC108425816,LOC108277497,LOC107586309,LOC107728221,LOC107597551,LOC107657549,LOC107729096,LOC107662792 coding downstream 402859 16148608 ~ 16158661 (-)
LOC103044128 ckm,ckmb,LOC107690449,LOC107718278,LOC107601735 coding upstream 56349 16619111 ~ 16622984 (-)
LOC103043199 NA coding upstream 93473 16656235 ~ 16658680 (-)
zc3h4 zc3h4,LOC107683834,LOC107601737,LOC107690443,LOC107718283,LOC107585556 coding upstream 111339 16674101 ~ 16686184 (-)
LOC103041159 NA coding upstream 1320014 17882776 ~ 17914128 (-)
mpzl3 NA coding upstream 1382312 17945074 ~ 17975882 (-)
G4245 NA non-coding downstream 23580 16537731 ~ 16537940 (-)
G4215 NA non-coding downstream 80870 16480335 ~ 16480650 (-)
G4197 NA non-coding downstream 248850 16312358 ~ 16312670 (-)
G4196 NA non-coding downstream 271794 16288143 ~ 16289726 (-)
G4192 chp2,LOC108425820,LOC108277499,LOC107657559,LOC107586310,LOC106580765 non-coding downstream 284781 16271630 ~ 16276739 (-)
G4253 NA non-coding upstream 16720 16579482 ~ 16579867 (-)
G4254 mark4,LOC106612588,LOC106580867 non-coding upstream 34826 16597588 ~ 16597900 (-)
G4255 NA non-coding upstream 38116 16600878 ~ 16601102 (-)
G4256 NA non-coding upstream 39139 16601901 ~ 16602113 (-)
G4257 mark4 non-coding upstream 44175 16606937 ~ 16607217 (-)
LOC103022652 LOC103022652,LOC108425821,LOC108277503 other downstream 278888 16278005 ~ 16282632 (-)
slc6a4 slc6a4,slc6a4a,LOC107743629,LOC107669739,LOC107548586,LOC107756784,LOC107589714,LOC107685089 other downstream 2089768 14380755 ~ 14471752 (-)
G3612 NA other downstream 2277295 14283623 ~ 14284225 (-)
LOC111189390 NA other downstream 2428283 14124173 ~ 14133237 (-)
slc43a2 slc43a2,LOC107685082,LOC107548581,LOC107589710 other downstream 2989148 13544500 ~ 13572372 (-)
ercc2 ercc2,LOC107743694,LOC107601732 other upstream 81730 16644492 ~ 16653968 (-)
LOC103040336 mpzl2 other upstream 1421123 17983885 ~ 17998749 (-)
G4621 NA other upstream 1467600 18030362 ~ 18040766 (-)
LOC103031959 NA other upstream 1633818 18196580 ~ 18226004 (-)
LOC103038769 NA other upstream 3076603 19639365 ~ 19648822 (-)

Expression


Co-expression Network